Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01313 ATGGGAAACACAATGGGAGGGGTATGTTCTAATGGAATAGTTAAGGATGATTTCGTGTCTGAGAAGATAACGCAAGCATCTGAGGATCGGAAAGGGAATTCGTGTTTGAATTTTGAGGCAAGTGACCCGAATGAAATGCCGCAGAAGTCTCGTTCTGGTGTGATACTATTGCCCTCACCTCCGTCTAAGACAGGAAACAATAAGGTTGCACCAATGAACGCACAATCAGGGGCTCGCGGGAGGGCAGTTGATTTATGGAAAACAATTGGGATTAGTGTGTCAAATTTGCATATGAACAGTGGGCTTTTTACAGGCATGACTTCTAATGGTAGGGAGATTTCTATATTGGCTTTTGAAGTAGCAAACACAATAAGCAAAGTAGCGAAGTTGTCACAATCTCTCTCAGAAGAAAACATTCAGCTCCTTAAAAAGGAAGTATTACAATCAGAAGGGATAAAACAATTAATCTCAACAAGTTTAGAGGAATTGCTAAGCATTGCAGCTGCTGACAAAAGGCAGGAATTTGACGTTGTGTCTCGGGAGGTAATACGATTTGGAAAGCAGTGCAAGGATTCACAGTGGCATAATCTGGATCAGTACTTTTCAAGACTAGATTTCAATGATTCAAGTCAAAAACAAGCTCTAGAGGCCAGAGCAACCTTGCGGGAACTAACCGTTTTAGCTCAGTATACTTCTGAACTATATCACGAATTACAAGCATTGGAAAGATTTGAGCAAGACTATAGACGGAAAGTTGATGAAGTGGAGTTCTTGAACCAAGCAGGAATAGGTTGGCTTGCAGCAGGCATTCAACTACTTATCTCGAACTCTTTACTTTACAAACCTACCATTGCAGATAAAACATTGCTTACGAAGGACAGAAGTAATGGCCAGAAACTGGGCGCTGTTGGTCTTGCCTTGCATTATGCAAACATAATCAGCCAGATAAATCTCATTGCCTGTCGTCCAACCTCCATTCCTTCAAACATGAGGGATGCATTATACCGGGCATTGCCTACAAGCGTTAAAATAGCTCTGCGCTCTCGATTGCGGGCTGTGGATGCCAGCGAGGAGTCAACTTATCTTGACGTCAAAGCTGAAATGGATAAGATCCTTGAATGGTTTGTTCCAATTGCTGCAAACACGAGCAACATGATCCGTGACAGAGCGCATCAAGCTTGTGGCAGGATTGGAGAATGGGCAACCCAAAGTAAGGAACACAGCAAAGGCAGAGCTACACAGAGCAACAATCCAATCCGCCTTCAAACGCTGTATCATGCAGACAAAGTAAAAACAGAGCAACAAATCCTTGAATTGGTCATATTGCTTCACCATCTCATCCATTTAGCAAAACGCCAACAACGACGCTCCACATCTCTCCGTTGCCGATCTCCAACTCCCAAGGACATGGCAAATAATGCTCGTCGAATACAATTCAAGAGCCAAATCATCAAAGCCAACAAAGATGGAGTTCCGGCTGAAAACAGACCATTGACCGGACAATCTCCGACCAGAAAGAGGGATCTTAGTAACAACAAAGGTATGGAATCTTACAAAAATGAGAATAAAGGAATTTGGACATTAAGCAAAGCGGTTTCGGTTTCGACCTTGACTTCTCTTGGTAGAGTCTAG 1632 42.95 MGNTMGGVCSNGIVKDDFVSEKITQASEDRKGNSCLNFEASDPNEMPQKSRSGVILLPSPPSKTGNNKVAPMNAQSGARGRAVDLWKTIGISVSNLHMNSGLFTGMTSNGREISILAFEVANTISKVAKLSQSLSEENIQLLKKEVLQSEGIKQLISTSLEELLSIAAADKRQEFDVVSREVIRFGKQCKDSQWHNLDQYFSRLDFNDSSQKQALEARATLRELTVLAQYTSELYHELQALERFEQDYRRKVDEVEFLNQAGIGWLAAGIQLLISNSLLYKPTIADKTLLTKDRSNGQKLGAVGLALHYANIISQINLIACRPTSIPSNMRDALYRALPTSVKIALRSRLRAVDASEESTYLDVKAEMDKILEWFVPIAANTSNMIRDRAHQACGRIGEWATQSKEHSKGRATQSNNPIRLQTLYHADKVKTEQQILELVILLHHLIHLAKRQQRRSTSLRCRSPTPKDMANNARRIQFKSQIIKANKDGVPAENRPLTGQSPTRKRDLSNNKGMESYKNENKGIWTLSKAVSVSTLTSLGRV 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21494700 21499419 - Lsi08G013130.1 Lsi08g01313 669239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01313 543 Coils Coil 241 261 - -
Lsi08g01313 543 PANTHER FACTOR G, PUTATIVE (DUF668)-RELATED 5 476 - -
Lsi08g01313 543 Pfam Domain of unknown function (DUF3475) 115 171 IPR021864 GO:0045927
Lsi08g01313 543 Pfam Protein of unknown function (DUF668) 300 382 IPR007700 GO:0045927
Lsi08g01313 543 MobiDBLite consensus disorder prediction 486 517 - -
Lsi08g01313 543 PANTHER OS01G0873900 PROTEIN 5 476 IPR045021 GO:0045927
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01313 - - - cmax:111492046 761.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01947 Lsi-Chr2:25351082 Lsi08g01313 Lsi-Chr8:21494700 1.71E-73 dispersed
Lsi08g01313 Lsi-Chr8:21494700 Lsi09g01250 Lsi-Chr9:20178244 4.00E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1123 Blo01g01602 . Bda01g00479 Bda03g00293 Bpe02g00621 Bpe04g00249 . Bma01g02372 Cmo05g00313 Cmo12g00356 . . . Car12g00382 Sed11g1091 . Cpe07g00361 Bhi04g00143 Tan02g2080 Cmetu03g0952 . Hepe10g0159 . Lcy13g1908 Cla08g01418 Cam08g1897 Cec08g1474 Cco08g1607 Clacu08g1589 . Cre08g1373 Cone4ag1976 Cone7ag1894 Cone17ag1409 Cone20ag0074 . . . Cme03g01874 . Blo18g00778 . . Bpe02g01728 Bpe05g00141 Bma01g00884 Bma05g00166 . . . Cma12g00405 Cma05g00311 Car05g00258 . Cpe11g00259 . . . . . . . . . . . . . . . Lsi08g01313 Csa02g02139 Chy03g01380 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003603 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 3 1 1 47