Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01314 ATGAGAGAGATTCTTCATGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGCGATCCTTCCTCCGATCTTCAATTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGCCAGTCCGGTGCCGGAAATAATTGGGCTAAAGGTCATTACACCGAAGGAGCCGAGTTGATCGATTCCGTTCTTGATGTTGTTCGTAAGGAGGCTGAGAATTGTGATTGCTTGCAAGCTACCGTACCGACACTGCCTTTTCTTAGCAAAATGACTGGCCACTCAAAGGTAAATTCTAATGGAAGTTTTCAGGTTTGTCACTCCCTTGGAGGAGGCACTGGTTCTGGCATGGGAACCCTCTTGATATCGAAGATTAGAGAAGAATATCCAGACAGGATGATGCTTACATTCTCGGTTTTCCCTTCTCCCAAGGTCTCAGACACGGTTGTGGAACCATATAATGCCACTCTTTCAGTTCACCAACTGGTTGAGAATGCAGATGAATGCATGGTTCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGGACCTTAAAGCTCAGCACTCCTAGCTTTGGCGACCTGAACCATTTGATCTCTGCAACCATGAGTGGAGTAACATGTTGCTTGAGATTCCCAGGTCAACTGAACTCAGACCTGAGAAAATTGGCAGTGAATCTAATCCCATTTCCCCGTCTTCACTTCTTCATGGTTGGATTTGCACCTCTGACCTCCCGTGGCTCCCAGCAATACATCTCCCTCACCGTCCCAGAGCTGACTCAACAAATGTGGGACGCTAAGAACATGATGTGCGCCGCTGACCCCCGCCACGGTCGCTACCTGACTGCCTCCGCCATGTTCAGAGGAAGAATGAGCACCAAAGAAGTAGACGAACAAATGATCAATGTACAAAACAAGAACTCATCCTACTTCGTGGAATGGATTCCCAACAACGTGAAGTCGAGCGTTTGTGACATTCCTCCAAAGGGCTTGAAAATGGCTTCCACATTCGTGGGAAACTCAACCTCGATTCAGGAAATGTTCAGAAGAGTGAGTGAGCAGTTCACAGCCATGTTTAGGCGCAAAGCTTTTCTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTTACAGAAGCAGAGAGTAATATGAATGATTTGGTGGCTGAGTATCAGCAGTATCAGGATGCTACTGTTGATGATGATGCTGATTTTGAGGATCGTGAAGAAGAGTATACCGATCAGTAA 1413 46.92 MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQATVPTLPFLSKMTGHSKVNSNGSFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDDADFEDREEEYTDQ 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21511266 21515381 + Lsi08G013140.1 Lsi08g01314 669240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01314 470 SMART Tubulin_C_4 270 407 IPR018316 -
Lsi08g01314 470 Pfam Tubulin/FtsZ family, GTPase domain 155 235 IPR003008 GO:0005525
Lsi08g01314 470 Pfam Tubulin/FtsZ family, GTPase domain 3 134 IPR003008 GO:0005525
Lsi08g01314 470 PANTHER TUBULIN 1 465 IPR000217 GO:0005874|GO:0007017
Lsi08g01314 470 Gene3D Helix hairpin bin 398 454 IPR023123 -
Lsi08g01314 470 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 267 IPR036525 -
Lsi08g01314 470 SUPERFAMILY Tubulin C-terminal domain-like 268 453 IPR008280 -
Lsi08g01314 470 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 164 170 IPR017975 GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 SMART Tubulin_4 49 268 IPR003008 GO:0005525
Lsi08g01314 470 Gene3D Tubulin/FtsZ, GTPase domain 1 286 IPR036525 -
Lsi08g01314 470 Gene3D - 287 397 IPR037103 -
Lsi08g01314 470 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Tubulin signature 214 234 IPR000217 GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Tubulin signature 175 196 IPR000217 GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Tubulin signature 200 213 IPR000217 GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Tubulin signature 394 422 IPR000217 GO:0005874|GO:0007017
Lsi08g01314 470 CDD beta_tubulin 2 450 - -
Lsi08g01314 470 Pfam Tubulin C-terminal domain 285 406 IPR018316 -
Lsi08g01314 470 Coils Coil 432 452 - -
Lsi08g01314 470 PRINTS Beta-tubulin signature 236 248 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 254 263 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 401 412 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 436 454 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 335 353 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 371 394 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 353 367 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 269 282 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PRINTS Beta-tubulin signature 289 305 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi08g01314 470 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 465 - -
Lsi08g01314 470 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01314 K07375 TUBB; tubulin beta - csv:101204817 861.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00231 Lsi-Chr2:1969051 Lsi08g01314 Lsi-Chr8:21511266 0 dispersed
Lsi03g02167 Lsi-Chr3:32775128 Lsi08g01314 Lsi-Chr8:21511266 0 dispersed
Lsi08g01314 Lsi-Chr8:21511266 Lsi09g00262 Lsi-Chr9:2736737 0 dispersed
Lsi08g01314 Lsi-Chr8:21511266 Lsi01g01519 Lsi-Chr1:13237434 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1117 . . Bda01g00482 . Bpe02g00346 . Bma04g00249 . . . . . . . Sed08g2609 . Cpe07g00363 Bhi04g00145 Tan02g2079 Cmetu03g2170 . Hepe10g0157 . Lcy13g1909 Cla08g01419 Cam08g1899 Cec08g1475 Cco08g1608 Clacu08g1590 . Cre08g1374 . . . . . . . Cme03g01875 Blo17g00745 . . Bda01g01531 Bpe02g01727 . . . . . . Cma12g00406 . . . . . . . . . . . . . . . . . . . Lsi08g01314 . Chy03g01381 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220