Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01330 ATGCTCGTCACATCCAATAGCAAATGCTTAAGTAGGGCTGAAGTTAAAAGTTTATCTGCAGATGAAAGCAGACTTGATGAACTTATAAGGTTGCTTGGGATGAAACAAGAGCTTCTGAGAAATCTCGAGGCAAATGCAAATCACAGGAAGAGCCTTTTCATAACAGAAGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATCGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAATGTAGACTGATCATCAAAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGACTGCAAAACAAGAGCTGGAAGAAAATGCTTCCAAGCAAGCGAAACTATCTTCAGTACAGCAGAAGAATCTTAACATATGTACCAACAATACTTGTTCTCCTTTCCAAGAATTTAATGGAATGCAGAGAATTTTACCTTTACATAATAACATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGGTGAGGAACACAACTTTTAA 570 39.65 MLVTSNSKCLSRAEVKSLSADESRLDELIRLLGMKQELLRNLEANANHRKSLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTAKQELEENASKQAKLSSVQQKNLNICTNNTCSPFQEFNGMQRILPLHNNIDDDYWFQSNSQVSITHLWGEEHNF 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21591913 21594021 + Lsi08G013300.1 Lsi08g01330 669256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01330 189 Pfam E2F transcription factor CC-MB domain 12 113 IPR032198 GO:0046983
Lsi08g01330 189 Coils Coil 25 45 - -
Lsi08g01330 189 PANTHER TRANSCRIPTION FACTOR E2F 12 186 IPR015633 GO:0000978|GO:0006357
Lsi08g01330 189 Coils Coil 116 136 - -
Lsi08g01330 189 CDD E2F_DD 12 113 IPR032198 GO:0046983
Lsi08g01330 189 Gene3D - 6 115 - -
Lsi08g01330 189 SUPERFAMILY E2F-DP heterodimerization region 12 113 IPR037241 -
Lsi08g01330 189 PANTHER TRANSCRIPTION FACTOR E2FC 12 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01330 K06620 E2F3; transcription factor E2F3 - csv:101211469 308.145
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01330 Lsi-Chr8:21591913 Lsi10g01142 Lsi-Chr10:15738236 6.13E-36 transposed
Lsi08g01330 Lsi-Chr8:21591913 Lsi01g01191 Lsi-Chr1:10116350 1.35E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30