Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01336 ATGCGAGGATTGCACAAAGGGAAAAGGGTTTCATGGGCATCAGATCTTAATCTCCGTCAGGTTAGGTTGTTCTTGTCTGAGGATTGTCCTTCCCAAGTGGGATTGGGTGCTCAAGATCACCTTCAGGCAAAGGCATCGTGGCTCTTGCATTCAACTGGTCCAGGTTCTGATGACACCTTGCCTCCTGGATTTGAAGTAGCTCATCCAGAGAATCAGTGGCAGATTAAGCTCTCACAAATTCCTGTAAATCAATGGAGATGTCCACCTAAGTTTGTGCTGAATTTGACGTGGCGAGTGGTTGTTGGTGAAGAAAGCCAAGAGGTAGATGTTGAAAATCAGAGAGAGATGAGAGTACTTGAAGCAGTTTATCCTCGAGCATCTGCAATTCCTCCTAACCCTTCTGTAGTACCTGATTCAGAACGTGCCAATGTCGATGACAGTCGGACACCTCTAATTCCCATTACTCCCGTTGAAGACGAAGATGCAACAACCGAGACCTTCGATTACGCAAGTCCTGCTGCTGTCCTTATGAGTGCACAGCCCTCCCTGTTTACTTCTGCTGGCACATCCACATCTGAACATGTTTTACTGAATGGGATGTCTTCTACTTCTAGCGTGAGTTCCATGGCTGGAATGGATATTGGCAACGAACGTGATGTTGTAGCTGCTGCATCAGCGGCACTCAGTGCATTGGTGAAGAGCAATGAGGTAGGTAACTCGATTGACCGCGAATTGCTTGTTAATATTCTCAACAATCCAAAAATGATTGAACAGCTGGTTGTGGATTCTGGTGCTGTCACTAGCACTCTAAAGCCAGTATCGTCTCCCGACCCACCGCTTGTACATATGCATATGTCAGAAGCCAATGCCAGTGTTACGCCTATATCAGGCAGTTCTTTTTATTCTCAACCAAATGGAGGGAGTGTAGGACCTGTCCCCAACGCACACCCTTCCCCAAGGGGCGTATCAGTTTCTTCCCTGCCCTCTACTGGAGCCCCAATGAAGGACTTGAATTACTATAAAAGTTTGATTCAGCAACATGGAGGGGAGAGACAAGACGATCCCCCTCGGCAGCAATTCGGGAACCGTCACAACCAGCCATCAGGCACAAACCAGGAGTTCTTACAAAACCAGTCATCAAGAGATGGGAAGTTGAAGATAATGAAGCCTTGCATATATTTTAACAGCTCGAGAGGATGTCGACATGGAGCCAATTGCGCATATCAACACGACCCCATGTTCCAGCAGAGAAATAGTAGTGTGCCAGAAATGCCGAGCTCCAAGAGAACAAAAGTTGATAGAGAAATCAGCAGTTAA 1317 46.85 MRGLHKGKRVSWASDLNLRQVRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPKFVLNLTWRVVVGEESQEVDVENQREMRVLEAVYPRASAIPPNPSVVPDSERANVDDSRTPLIPITPVEDEDATTETFDYASPAAVLMSAQPSLFTSAGTSTSEHVLLNGMSSTSSVSSMAGMDIGNERDVVAAASAALSALVKSNEVGNSIDRELLVNILNNPKMIEQLVVDSGAVTSTLKPVSSPDPPLVHMHMSEANASVTPISGSSFYSQPNGGSVGPVPNAHPSPRGVSVSSLPSTGAPMKDLNYYKSLIQQHGGERQDDPPRQQFGNRHNQPSGTNQEFLQNQSSRDGKLKIMKPCIYFNSSRGCRHGANCAYQHDPMFQQRNSSVPEMPSSKRTKVDREISS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21662307 21667345 - Lsi08G013360.1 Lsi08g01336 669262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01336 438 MobiDBLite consensus disorder prediction 359 381 - -
Lsi08g01336 438 MobiDBLite consensus disorder prediction 296 330 - -
Lsi08g01336 438 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 433 - -
Lsi08g01336 438 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Lsi08g01336 438 MobiDBLite consensus disorder prediction 416 438 - -
Lsi08g01336 438 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 433 - -
Lsi08g01336 438 SUPERFAMILY CCCH zinc finger 390 421 IPR036855 GO:0046872
Lsi08g01336 438 MobiDBLite consensus disorder prediction 130 154 - -
Lsi08g01336 438 MobiDBLite consensus disorder prediction 347 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01336 - - - csv:101207454 781.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00623 Lsi-Chr1:5027254 Lsi08g01336 Lsi-Chr8:21662307 4.06E-70 dispersed
Lsi05g00961 Lsi-Chr5:16766505 Lsi08g01336 Lsi-Chr8:21662307 5.82E-47 transposed
Lsi01g00616 Lsi-Chr1:4933946 Lsi08g01336 Lsi-Chr8:21662307 1.17E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007937 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25806 None None None None Lsi TF