Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01338 ATGGATGACAGTGGACACCGTGAGAATGGACGGCACAAAGCAGATCAGTATAAGTCGGCTCAGGGTGGACAGTGGATGATGCAGCATCAACCATCAATGAAGCAGATAATGACAATTATGGCTGAAAGAGATGCAGCCCTTCAAGAGAGGAATTTGGCCCTTTCCGAGAAGAAGGCTGCACTAGCAGAGCGAGACATGGCTTATCTACAGCGAGATGCTGCGCTTGCAGAGAGGAACAATGCCCTTTTGGAAAGAGACAATGCCATTGCTACTCTTCAGTATCGTGAAAACTCCTTAACAAATAACAATATATCATGTCCACCAGGATGCCAAATTGCTAGGGGAGTGAAGCATATACATCATCCACAGCAGCAACAACAACACACACATCATGTGCCCCACGTGAATGAGAGTAATTACAATTCCAGAGAAATGCATCCTTCAAACGATGCTTGTCCAATATCCCCCGTTGCTTCTGAATCAACAAAAGCACGGCGAAACAAGCGTACAAAGGAGGGAAAGACAGTTACAACACCAAACAAGAAGGTTTCAAAAGGTCCAAGGAAGGTCAAAAGAGAAGCTGAAGACTTGAATAAGGTAATGCTGGGCAAGTCACAAGAATGGAAGGATGGAATTGGTATCATGAGTGGAGGTGATGATCTTAATAAACAGTTGGTGGTATCAAAATCAGATTGGAAGGGCCAGGATTTAGGATTGAACCAGGTTGCCTTTGATGAATCAACCATGCCAGCTCCAATATGCTCCTGCACAGGAGTTATAAGACAATGCTACAAATGGGGAAATGGTGGATGGCAATCTGCATGTTGTACTACAACCATCTCAATGTATCCATTACCTGCTGTTCCCAACAAACGACACGCCCGACTCGGTGGTCGGAAAATGAGCGGAAGCGCTTTCAACAAGCTGCTTAGCCGCCTTGCAGCTGAAGGCCACGATCTGTCTGCTCCAGTTGATCTTAAAAATCACTGGGCAAAGCATGGAACAAATCGTTACATCACCATCAAGTAG 1029 45.38 MDDSGHRENGRHKADQYKSAQGGQWMMQHQPSMKQIMTIMAERDAALQERNLALSEKKAALAERDMAYLQRDAALAERNNALLERDNAIATLQYRENSLTNNNISCPPGCQIARGVKHIHHPQQQQQHTHHVPHVNESNYNSREMHPSNDACPISPVASESTKARRNKRTKEGKTVTTPNKKVSKGPRKVKREAEDLNKVMLGKSQEWKDGIGIMSGGDDLNKQLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTISMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21684989 21689048 - Lsi08G013380.1 Lsi08g01338 669264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01338 342 MobiDBLite consensus disorder prediction 1 24 - -
Lsi08g01338 342 SMART GAGA_bind_2 1 342 IPR010409 -
Lsi08g01338 342 MobiDBLite consensus disorder prediction 162 178 - -
Lsi08g01338 342 PANTHER - 1 342 IPR010409 -
Lsi08g01338 342 MobiDBLite consensus disorder prediction 1 15 - -
Lsi08g01338 342 Pfam GAGA binding protein-like family 1 342 IPR010409 -
Lsi08g01338 342 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 342 - -
Lsi08g01338 342 MobiDBLite consensus disorder prediction 137 190 - -
Lsi08g01338 342 Coils Coil 59 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01338 - - - csv:101207697 630.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00717 Lsi-Chr9:8228722 Lsi08g01338 Lsi-Chr8:21684989 9.05E-40 transposed
Lsi11g01148 Lsi-Chr11:20002856 Lsi08g01338 Lsi-Chr8:21684989 1.99E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00717 . 289 568 BBR/BPC Transcription factor family AT2G01930 56.4 1.5e-82 303.1
Lsi09g00717 . 450 568 BBR/BPC Transcription factor family AT2G35550 59.7 6.5e-41 164.5
Lsi08g01338 . 228 342 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Lsi11g01148 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
Lsi08g01338 . 236 342 BBR/BPC Transcription factor family AT1G68120 57.0 3.0e-37 152.5
Lsi11g01148 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 3.7e-84 308.5
Lsi11g01148 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.7 1.3e-70 263.5
Lsi08g01338 . 89 342 BBR/BPC Transcription factor family AT5G42520 57.3 3.2e-69 258.8
Lsi09g00717 . 450 568 BBR/BPC Transcription factor family AT2G35550 59.7 6.5e-41 164.5
Lsi08g01338 . 228 342 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Lsi11g01148 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25807 PF06217 GAGA_bind 3.80E-106 No_clan Lsi TF