Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01341 ATGGATGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGACGGTGGGTTTGACTCAGATGATGATGAGCCCATTGGCTCTCTGCTGAAGTTGAAGAGATCACGAAACTCTAAAAAGACTAAGTTGGGTGTAGACGATGGTGGTGAAAGGGACAAGATGGTTGACAAGAAAGGAGCAAAATTGCCAGTGCAAGAGGATTTTGGGGGAATGGATGATACTTTAGCTAGTTTCAGAAAGAAGTTGAGGCGTCCTAAAAGGGTTAGTGGACCCGGAATTGCTAGGGAACAGAGTTCTGCTCTAAGTGTGACAGAATCTTTAGATCCATTATCTAATACATCCAGAGGACAAGGGGATTTAGACACAAGACTGAGACCAGAAAATGGTGAATTAATGGATTGTGAAGAGTCTCATCCATCTGCAAAGATTGATGTAGAAACGAGGTGTGAAGCACCTGATTTCGAATTAAAAGCCATGGAGTTGGGTAGCTCGAGTAGGAGAAGTTCTAATTGCTCTTTCGATAAACAGTTGGATGATTCATTGTCAGCATTTGTCCAAAAGGTTCACTCTGGTTCTACTAGGAAATCATTGGTATCTACAATATTTAAACCAGACTGCAAGGATGAGGCTTCTGAAGATAAATTGAGTAATTTTTCTAGAGCTGTTTCTGGGGATCATGAAACACACTCAATTGTGAGTTCTAATTCTTCGGCTAAGCTGGCACAAGTTATCAAAAAACCAGATTCTGAACTTACTACATCATATTTAATTTCCTGTTCGCATTGCACCAAAGAGAATTGTAATCCTGGTGGAGGACAATGCCATCAAGGGGTTGAACGTGACCAAGAAGAGTATCAATGCTGTCTCAATAATCACAAGAATCCTGACATGAGACCATGCATATCAAATGAAGTTGCTGATGAAGACAGCAAAAACTATAGTCATTTTACGGACAATTTCCAGGCACGGGAAAGAAAGGCATCCTGTGAAATCAAGAATGGGCTAGGTGAAAATCAACTTAATGAAAATATGTGCAGTTCTTGTCGCCCTCTAGAACAGGTAAAGGAAAACCATGGTCTTTGTGGTGGTGTTTCCAGCGGAGATGTTTGTGATGTGGTGGCCCAAGAGACCACAGTCGCTTTGTCGAAAACAACTCCAAGTGTAGATTGGGAAGCAAAAGAAAGATCACTTGTTGTACATCACGATGAATTGCTGAACTCTTCCAATTTCTGTGAAAGTTCTTCCAAAGAAATCTGTAGATCTACTCAAGATTTAAACATTTTTGATCAATCATTAGACAGAACAACACTCTCCAATCCTCAGCTATTTGCAGGTTTCGATTCAACGAAAGTGGATAAAACTTGCAGTGACTCTGATAATTTAAATACTGGAACTGTCGAGCCAAATAGTGAAGGTGGTTCTATGCAGAAGGAAAATGCTCTGATCTCGAATAGGATTTCAGATTCAACTGCTGTTCAATCTCACAGATGCCAAAAATCTGGGGCAACCGCCTCTGGACCAAATTATCCAGAGGTTTGTACTAGTGGAAATTTCAGCATGATTTCAGATAGTCAACTGGCAAAGGCTTCAGTGGAGATAGATGGTCCAAATAATATACTTACTGGTAAAGAGGTTAAGGTATCTTCTCTTGGGTCTTTCACTCCAGATGATAATGACCTTGAGGATGTAATATCTGCTCCTGGTAGTGAAAAAGATTTAAAGCTTTCAGCTTTACAACGTGTAGCGCGCAGGACCAAGAAGCCTAGACACGATGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGATCAGTGAGCGTACAGTTGATGGTGACCATTCTTTCAGATCAAGAAAGGATTCTACGTCAACAACTTTTACAGAGATTGAAACTGGTGGTAGAGCTGCAGTGTCCGCAGGGCTTAAGGCACATGCAGTTGGTCTACTTGAGAAGATTAAATTTAAGGACGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACATAGCATGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACACGCATTTTGCATCTCGTTGACTGTGGGGTCACTGATACTCCCTCTATGGATGAACCACCACGTTTTCCCCTTATTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCTTATGAGAAAGCCAAAGCAGAATCTGACATTAAATATGATCATGAACTGGGAGAAAAGAAGATCAGAGACGTTAGTGTTGCTTCAGCTGCTGATTCTGAAGAAGGGGTTTCTGTCATGGTAAAAAGTTCTGATGCTTTTAATGCAGAGAACGATGTTTCAGCTGGCTGTGAAGTAATATTGGAAGATGCTGAAGGAAGAGACCCCATGATTGCGAATAATTTGGATTTCCCAAAAGCAGTGGAACATGAACAAGAATTGGTACATGACTTGGAGTATGGTACTCCTGATCCTATATCGGTAAAATTGGTAGGTGATGTTCCAGGTAACGATGCCTCGCATTTAACTAATCATTCAAGAAACGGTTGGCACCCAATCCACTCCTCTGATGAGTGTGTAAGAGGTGATCAACAACAGCAGAGTAATTCTGAAGTCAGAAAGAAAGTAATTGTTATTGGAGCTGGTCCTGCTGGCTTAACTGCTGCAAAGCACTTGCATCGTCAGGGCTTCGCGGTCACCGTAGTTGAAGCCAGGAATAGGTTAGGAGGTCGTGTTCATACAGATCGCTCCTCTCTTTCTGTTCCTGTGGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTTGCAACCGAAAGAAGACCCGATCCTTCCTCATTGATTTGCACCCAATTGGGCCTTGAGTTGACTGTATTAAATAGTGACTGTCCCCTCTATGACATCATTACATGCAAAAAAGTTCCAGTAGACATGGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGACGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGGCCATGTCTCTTGAGGAGGGTTTAGAATATGCCCTCAAGCGACGACGCATGGCTCGAGGAATGGATGTTTGTTCTGAGGAAGAGGTTTTGAGTCCCTTTGAGAGGAGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAATTGGAATCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTTGATGTTCACCTAAATCATGTTGTGGCCGATATTTCTTACAGCACCAATGACATTGGGTTTAATGGGAGTCAGTGTGCAAAGGTAAAAGTTTCCACAACCAATGGTTGCGTGTTTCTAGGAGATGCTGTACTTATTACTGTGCCTCTTGGGTGCTTGAAAGCAGAAACTATTAAATTTTCTCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGGTTTGGAGTTCTTAACAAAATAGTTCTTGAATTTCCCGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCAGTTCTCATAGCACTAGTGGTTGGTCAGGCGGCCGTGGAGAGGCAATATATGAGCTCTTCCGATAATGTAAACCATGCATTAATGGTCCTTCGCAAACTTTTTGGAGAAGCTATGGTACCTGATCCAGTTGCATCTGTTGTAACTGATTGGGGAAGAGATCCGTTTAGCTATGGTGCTTACTCATATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCAAAACCTGTTGGAAACTGTTTGTTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTACGCATGATTGATGTATTGAGTGATGGATATGATTTCACAACAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACATAATTACAAGACTTGATGCTGTTAAGCTTTCTGATGCTCTTTACAAAAATTCTTTGGATGGTGTCAGGATTTTGACCACAGAAGCACTACTACAAGATTTGTTTTTTAGTGCAAAAACGACAGCAGGGAGATTGCATGTGGCAAAAGAGTTGCTGAATCTCCCTACTGATACGTTGAAGTCCTTTGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTTTGGACTCAATGGGGAAGGATGGAACTCAACTTCTTCGGCAATGTGTTCGTATTCTTGTGCTAGTTTCAACAGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATCCGTGCCATTGCGAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAGGCTGCTAATGGGGGGTTAAAACTCTCTAAGTCAGTTTATGCTGTAGAATTATTGAAGAGGAAATCTAATAAAGATTCTTCTTCTGGGAAACCACCTTTGCATGCAAACAACAGCACACTGGATAGTAGGGGCAATTTGCTGACTTCTGCATCAGCTGCAATTCCCTTGCAGTCTGATGTCAATATGAAAAATGATAATATCAAACAATTGAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTCGGAAAGCAGGATGCAGAGATGGAAGACAACAACATTGCTATGACAGAAGAAGAGGAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCCGCACTTGCAGCTGCGAAGGCATATGCATCTTCTGAAGCCAAGAGTGCGATGCAGCTCCCAAAAATCCCCTCCTTTCACAAATTTGCTAGACGGGAGCATTATGCTCAAATGGATGAGTGTGAGTATAAAAAGAAGTTGTCTGGCAGTGTGCTAGGGAGACAAGATTGTATATCCGAAATAGATTCAAGAAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCTGCAGATAACCTTTCACAAAGAAGCCATTCGAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCTGGTGAAAGTGCTCCTGTGGATAGTAGTATATACACGAAAGCATGGGTTGATACAGCTGGTAGTGTTGGAATGAAAGATTATCATGCTATTGAGAGATGGCGCACTCAAGCAGCTGCAGCTCATGTAAATGATGAGGAGGATTCAAACACAAATTGGCATAAACCCACTTGGAATAGTGATCAAGTAGCGAACGAGAGCTCAATATCACAAGTGACGATCAACAAGGAGCCTATAAGAAGCCATCATCGTGGGGCTGACAGAATTAAGCAGGCTGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCCACCGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGATTCGTGCCTTTGTAGACAAATTAATAGAGAGGCATATGGCTACAAAGCCAGTAATGAAGTCGTGA 5751 42.25 MDGDNKKSGFRKRTKPKDGGFDSDDDEPIGSLLKLKRSRNSKKTKLGVDDGGERDKMVDKKGAKLPVQEDFGGMDDTLASFRKKLRRPKRVSGPGIAREQSSALSVTESLDPLSNTSRGQGDLDTRLRPENGELMDCEESHPSAKIDVETRCEAPDFELKAMELGSSSRRSSNCSFDKQLDDSLSAFVQKVHSGSTRKSLVSTIFKPDCKDEASEDKLSNFSRAVSGDHETHSIVSSNSSAKLAQVIKKPDSELTTSYLISCSHCTKENCNPGGGQCHQGVERDQEEYQCCLNNHKNPDMRPCISNEVADEDSKNYSHFTDNFQARERKASCEIKNGLGENQLNENMCSSCRPLEQVKENHGLCGGVSSGDVCDVVAQETTVALSKTTPSVDWEAKERSLVVHHDELLNSSNFCESSSKEICRSTQDLNIFDQSLDRTTLSNPQLFAGFDSTKVDKTCSDSDNLNTGTVEPNSEGGSMQKENALISNRISDSTAVQSHRCQKSGATASGPNYPEVCTSGNFSMISDSQLAKASVEIDGPNNILTGKEVKVSSLGSFTPDDNDLEDVISAPGSEKDLKLSALQRVARRTKKPRHDDMAYEGDIDWEVLISERTVDGDHSFRSRKDSTSTTFTEIETGGRAAVSAGLKAHAVGLLEKIKFKDVLKRKGGLQEYIACRNQILGLWCKDVTRILHLVDCGVTDTPSMDEPPRFPLIREIYAFLNLRGYINAGIAYEKAKAESDIKYDHELGEKKIRDVSVASAADSEEGVSVMVKSSDAFNAENDVSAGCEVILEDAEGRDPMIANNLDFPKAVEHEQELVHDLEYGTPDPISVKLVGDVPGNDASHLTNHSRNGWHPIHSSDECVRGDQQQQSNSEVRKKVIVIGAGPAGLTAAKHLHRQGFAVTVVEARNRLGGRVHTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIITCKKVPVDMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARGMDVCSEEEVLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLDVHLNHVVADISYSTNDIGFNGSQCAKVKVSTTNGCVFLGDAVLITVPLGCLKAETIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSDNVNHALMVLRKLFGEAMVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILAKPVGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSDGYDFTTEVEAMEAAQRQSECENDEVGDIITRLDAVKLSDALYKNSLDGVRILTTEALLQDLFFSAKTTAGRLHVAKELLNLPTDTLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVYAVELLKRKSNKDSSSGKPPLHANNSTLDSRGNLLTSASAAIPLQSDVNMKNDNIKQLKLEMENSSKSDISSSRSRGSFGKQDAEMEDNNIAMTEEEEAAFAAAEAARAAALAAAKAYASSEAKSAMQLPKIPSFHKFARREHYAQMDECEYKKKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVNDEEDSNTNWHKPTWNSDQVANESSISQVTINKEPIRSHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPVMKS 1916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21712379 21721924 + Lsi08G013410.1 Lsi08g01341 669267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01341 1916 MobiDBLite consensus disorder prediction 1535 1555 - -
Lsi08g01341 1916 MobiDBLite consensus disorder prediction 1590 1605 - -
Lsi08g01341 1916 Coils Coil 1574 1594 - -
Lsi08g01341 1916 Gene3D - 636 739 IPR036388 -
Lsi08g01341 1916 MobiDBLite consensus disorder prediction 1588 1609 - -
Lsi08g01341 1916 PANTHER FLAVIN MONOAMINE OXIDASE 582 1912 - -
Lsi08g01341 1916 MobiDBLite consensus disorder prediction 1 33 - -
Lsi08g01341 1916 Gene3D - 965 1292 - -
Lsi08g01341 1916 SUPERFAMILY FAD-linked reductases, C-terminal domain 1175 1286 - -
Lsi08g01341 1916 ProSiteProfiles SWIRM domain profile. 636 736 IPR007526 GO:0005515
Lsi08g01341 1916 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 582 1912 - -
Lsi08g01341 1916 MobiDBLite consensus disorder prediction 42 66 - -
Lsi08g01341 1916 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1434 1519 IPR035441 -
Lsi08g01341 1916 Pfam Flavin containing amine oxidoreductase 886 1337 IPR002937 GO:0016491
Lsi08g01341 1916 Gene3D - 878 1335 IPR036188 -
Lsi08g01341 1916 Pfam SWIRM domain 648 726 IPR007526 GO:0005515
Lsi08g01341 1916 SUPERFAMILY FAD/NAD(P)-binding domain 875 1339 IPR036188 -
Lsi08g01341 1916 MobiDBLite consensus disorder prediction 1 125 - -
Lsi08g01341 1916 MobiDBLite consensus disorder prediction 98 122 - -
Lsi08g01341 1916 SUPERFAMILY Homeodomain-like 639 730 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01341 - - - bhj:120075972 3461.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00809 Lsi-Chr7:9016632 Lsi08g01341 Lsi-Chr8:21712379 1.12E-63 dispersed
Lsi08g00698 Lsi-Chr8:15280007 Lsi08g01341 Lsi-Chr8:21712379 2.67E-98 dispersed
Lsi08g01341 Lsi-Chr8:21712379 Lsi11g00188 Lsi-Chr11:1968529 2.84E-29 dispersed
Lsi08g01341 Lsi-Chr8:21712379 Lsi04g01900 Lsi-Chr4:26163193 1.89E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25808 PF01593 Amino_oxidase 9.90E-100 CL0063 Lsi TR