Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01342 ATGTCGTCAACTTTCAGCGGCGATGAAACGGCGCCCTTCTTCGGCTTCCTTGGCGCCGCTGCAGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGGACGGCGAAAAGCGGGGTGGGAGTTGCCTCTATGGGTGTAATGAGGCCTGAGCTGGTGATGAAGTCAATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTGATTATTAGTACAGGGATTAACCCCAAGGCCAAATCTTACTACCTCTTTGATGGTTACGCGCATCTCTCCTCTGGGCTTGCTTGTGGCCTTGCTGGTCTGTCCGCTGGCATGGCTATCGGGATCGTTGGTGATGCTGGTGTTAGGTACTATTTGTTAACGTTTTGCGACTTTTTTTTTGGTCGTCGTATTTCGTTCGTGTGGGGTTTATATGTTGGATACGACTTTGATGGATCCATGTCGTGGTTATATTTCGTATCGGGTGTGGAAATGGGTATAAAAGTTTTTGTCAAAATGAATTTAGCCAATGCGCAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTTTAATTTTTGCCGAAGCTTTGGCACTCTATGGACTTATTGTTGGCATTATTCTCTCTTCCCGAGCTGGTCAGTCAAGAGCTGATTAA 654 46.64 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYLLTFCDFFFGRRISFVWGLYVGYDFDGSMSWLYFVSGVEMGIKVFVKMNLANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21724821 21726348 + Lsi08G013420.1 Lsi08g01342 669268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01342 217 SUPERFAMILY F1F0 ATP synthase subunit C 160 208 IPR035921 -
Lsi08g01342 217 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi08g01342 217 Pfam ATP synthase subunit C 97 123 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi08g01342 217 Pfam ATP synthase subunit C 174 207 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi08g01342 217 PANTHER V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT 162 217 - -
Lsi08g01342 217 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 123 - -
Lsi08g01342 217 Gene3D - 151 214 IPR035921 -
Lsi08g01342 217 Gene3D - 11 125 IPR035921 -
Lsi08g01342 217 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01342 217 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01342 217 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01342 217 PANTHER V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT 3 123 - -
Lsi08g01342 217 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lsi08g01342 217 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Lsi08g01342 217 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 162 217 - -
Lsi08g01342 217 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 208 - -
Lsi08g01342 217 SUPERFAMILY F1F0 ATP synthase subunit C 87 123 IPR035921 -
Lsi08g01342 217 SUPERFAMILY F1F0 ATP synthase subunit C 14 77 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01342 Lsi-Chr8:21724821 Lsi08g01343 Lsi-Chr8:21729053 2.04E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01342 K02155 - ming:122061701 244.202