Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01342 | ATGTCGTCAACTTTCAGCGGCGATGAAACGGCGCCCTTCTTCGGCTTCCTTGGCGCCGCTGCAGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGGACGGCGAAAAGCGGGGTGGGAGTTGCCTCTATGGGTGTAATGAGGCCTGAGCTGGTGATGAAGTCAATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTGATTATTAGTACAGGGATTAACCCCAAGGCCAAATCTTACTACCTCTTTGATGGTTACGCGCATCTCTCCTCTGGGCTTGCTTGTGGCCTTGCTGGTCTGTCCGCTGGCATGGCTATCGGGATCGTTGGTGATGCTGGTGTTAGGTACTATTTGTTAACGTTTTGCGACTTTTTTTTTGGTCGTCGTATTTCGTTCGTGTGGGGTTTATATGTTGGATACGACTTTGATGGATCCATGTCGTGGTTATATTTCGTATCGGGTGTGGAAATGGGTATAAAAGTTTTTGTCAAAATGAATTTAGCCAATGCGCAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTTTAATTTTTGCCGAAGCTTTGGCACTCTATGGACTTATTGTTGGCATTATTCTCTCTTCCCGAGCTGGTCAGTCAAGAGCTGATTAA | 654 | 46.64 | MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYYLLTFCDFFFGRRISFVWGLYVGYDFDGSMSWLYFVSGVEMGIKVFVKMNLANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 217 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 21724821 | 21726348 | + | Lsi08G013420.1 | Lsi08g01342 | 669268 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01342 | 217 | SUPERFAMILY | F1F0 ATP synthase subunit C | 160 | 208 | IPR035921 | - | |
| Lsi08g01342 | 217 | Pfam | ATP synthase subunit C | 17 | 76 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
| Lsi08g01342 | 217 | Pfam | ATP synthase subunit C | 97 | 123 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
| Lsi08g01342 | 217 | Pfam | ATP synthase subunit C | 174 | 207 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
| Lsi08g01342 | 217 | PANTHER | V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT | 162 | 217 | - | - | |
| Lsi08g01342 | 217 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 123 | - | - | |
| Lsi08g01342 | 217 | Gene3D | - | 151 | 214 | IPR035921 | - | |
| Lsi08g01342 | 217 | Gene3D | - | 11 | 125 | IPR035921 | - | |
| Lsi08g01342 | 217 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 107 | 133 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
| Lsi08g01342 | 217 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 56 | 80 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
| Lsi08g01342 | 217 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 30 | 54 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
| Lsi08g01342 | 217 | PANTHER | V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT | 3 | 123 | - | - | |
| Lsi08g01342 | 217 | TIGRFAM | V_ATP_synt_C: V-type ATPase, C subunit | 13 | 121 | IPR011555 | GO:0033179|GO:0046961|GO:1902600 | |
| Lsi08g01342 | 217 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 13 | 80 | - | - | |
| Lsi08g01342 | 217 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 162 | 217 | - | - | |
| Lsi08g01342 | 217 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 89 | 208 | - | - | |
| Lsi08g01342 | 217 | SUPERFAMILY | F1F0 ATP synthase subunit C | 87 | 123 | IPR035921 | - | |
| Lsi08g01342 | 217 | SUPERFAMILY | F1F0 ATP synthase subunit C | 14 | 77 | IPR035921 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01342 | K02155 | ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit | - | ming:122061701 | 244.202 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi08g01342 | Lsi-Chr8:21724821 | Lsi08g01343 | Lsi-Chr8:21729053 | 2.04E-106 | tandem |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lsi08g01538 | . | 1 | 1021 | Primary Pumps ATPases(2) | AT1G10130 | 80.4 | 0.0e+00 | 1590.9 | |
| Lsi10g01308 | . | 1 | 808 | Primary Pumps ATPases(2) | AT2G28520 | 73.4 | 0.0e+00 | 1209.9 | |
| Lsi08g01352 | . | 1 | 800 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 1.9e-260 | 895.6 | |
| Lsi11g01128 | . | 10 | 745 | Primary Pumps ATPases(2) | AT2G28520 | 54.5 | 3.4e-225 | 778.5 | |
| Lsi08g01352 | . | 1 | 805 | Primary Pumps ATPases(2) | AT2G21410 | 66.4 | 0.0e+00 | 1081.6 | |
| Lsi11g01128 | . | 6 | 744 | Primary Pumps ATPases(2) | AT2G21410 | 64.9 | 2.4e-282 | 968.4 | |
| Lsi10g01308 | . | 9 | 812 | Primary Pumps ATPases(2) | AT2G21410 | 56.1 | 2.2e-264 | 908.7 | |
| Lsi08g01352 | . | 1 | 805 | Primary Pumps ATPases(2) | AT4G39080 | 66.4 | 4.5e-313 | 1070.5 | |
| Lsi11g01128 | . | 8 | 745 | Primary Pumps ATPases(2) | AT4G39080 | 66.8 | 3.9e-285 | 977.6 | |
| Lsi10g01308 | . | 9 | 812 | Primary Pumps ATPases(2) | AT4G39080 | 57.0 | 3.2e-263 | 904.8 | |
| Lsi04g02391 | . | 32 | 170 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 1.6e-61 | 232.3 | |
| Lsi08g01343 | . | 28 | 197 | Primary Pumps ATPases(2) | AT4G34720 | 80.6 | 1.3e-55 | 212.6 | |
| Lsi08g01342 | . | 28 | 217 | Primary Pumps ATPases(2) | AT4G34720 | 71.6 | 2.7e-53 | 204.9 | |
| Lsi08g01343 | . | 2 | 197 | Primary Pumps ATPases(2) | AT1G75630 | 81.2 | 1.5e-68 | 256.1 | |
| Lsi08g01342 | . | 2 | 217 | Primary Pumps ATPases(2) | AT1G75630 | 77.3 | 9.4e-68 | 253.4 | |
| Lsi04g02391 | . | 33 | 170 | Primary Pumps ATPases(2) | AT1G75630 | 79.1 | 1.7e-53 | 206.1 | |
| Lsi08g01343 | . | 3 | 197 | Primary Pumps ATPases(2) | AT2G16510 | 83.1 | 4.1e-69 | 257.7 | |
| Lsi08g01342 | . | 3 | 217 | Primary Pumps ATPases(2) | AT2G16510 | 74.9 | 8.6e-67 | 250.0 | |
| Lsi04g02391 | . | 33 | 170 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 2.0e-60 | 228.8 | |
| Lsi08g01342 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 3.1e-53 | 204.5 | |
| Lsi08g01343 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Lsi04g02391 | . | 33 | 127 | Primary Pumps ATPases(2) | AT1G19910 | 98.9 | 4.8e-38 | 154.1 | |
| Lsi08g01161 | . | 6 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.1 | 3.9e-70 | 261.5 | |
| Lsi04g02151 | . | 4 | 187 | Primary Pumps ATPases(2) | AT2G25610 | 79.3 | 1.7e-68 | 256.1 | |
| Lsi04g02391 | . | 33 | 170 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 1.7e-60 | 228.8 | |
| Lsi08g01343 | . | 28 | 197 | Primary Pumps ATPases(2) | AT4G38920 | 80.6 | 3.7e-55 | 211.1 | |
| Lsi08g01342 | . | 28 | 217 | Primary Pumps ATPases(2) | AT4G38920 | 71.6 | 7.7e-53 | 203.4 | |
| Lsi08g01161 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.8 | 5.1e-72 | 267.7 | |
| Lsi04g02151 | . | 11 | 187 | Primary Pumps ATPases(2) | AT4G32530 | 76.5 | 8.7e-72 | 266.9 | |
| Lsi02g01380 | . | 1 | 1098 | Primary Pumps ATPases(2) | AT1G07810 | 78.1 | 0.0e+00 | 1651.7 | |
| Lsi02g01380 | . | 1 | 1098 | Primary Pumps ATPases(2) | AT1G07670 | 77.8 | 0.0e+00 | 1651.7 | |
| Lsi08g01538 | . | 1 | 1021 | Primary Pumps ATPases(2) | AT1G10130 | 80.4 | 0.0e+00 | 1590.9 | |
| Lsi02g01380 | . | 22 | 1079 | Primary Pumps ATPases(2) | AT4G00900 | 63.8 | 0.0e+00 | 1302.3 | |
| Lsi06g00109 | . | 1 | 145 | Primary Pumps ATPases(2) | AT4G02620 | 73.8 | 3.8e-54 | 207.6 | |
| Lsi11g01217 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 2.0e-268 | 921.4 | |
| Lsi09g00869 | . | 105 | 471 | Primary Pumps ATPases(2) | AT1G12840 | 76.8 | 9.1e-157 | 550.1 | |
| Lsi11g01651 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 1.3e-117 | 419.5 | |
| Lsi03g01626 | . | 74 | 516 | Primary Pumps ATPases(2) | AT3G42050 | 80.1 | 1.5e-203 | 705.7 | |
| Lsi08g01343 | . | 3 | 197 | Primary Pumps ATPases(2) | AT2G16510 | 83.1 | 4.1e-69 | 257.7 | |
| Lsi08g01342 | . | 3 | 217 | Primary Pumps ATPases(2) | AT2G16510 | 74.9 | 8.6e-67 | 250.0 | |
| Lsi04g02391 | . | 33 | 170 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 2.0e-60 | 228.8 | |
| Lsi11g01217 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 2.3e-269 | 924.5 | |
| Lsi07g01500 | . | 1 | 185 | Primary Pumps ATPases(2) | AT1G64200 | 74.0 | 7.7e-67 | 250.4 | |
| Lsi11g01217 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 4.1e-266 | 913.7 | |
| Lsi10g01308 | . | 1 | 808 | Primary Pumps ATPases(2) | AT2G28520 | 73.4 | 0.0e+00 | 1209.9 | |
| Lsi08g01352 | . | 1 | 800 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 1.9e-260 | 895.6 | |
| Lsi11g01128 | . | 10 | 745 | Primary Pumps ATPases(2) | AT2G28520 | 54.5 | 3.4e-225 | 778.5 | |
| Lsi03g01466 | . | 2 | 197 | Primary Pumps ATPases(2) | AT3G28715 | 81.5 | 9.1e-95 | 344.0 | |
| Lsi07g01500 | . | 1 | 263 | Primary Pumps ATPases(2) | AT4G11150 | 64.8 | 2.1e-79 | 292.4 | |
| Lsi02g02834 | . | 1 | 626 | Primary Pumps ATPases(2) | AT1G78900 | 90.2 | 0.0e+00 | 1139.4 | |
| Lsi11g01217 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 2.0e-268 | 921.4 | |
| Lsi11g01217 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 2.3e-269 | 924.5 | |
| Lsi11g01217 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 4.1e-266 | 913.7 | |
| Lsi09g00869 | . | 105 | 471 | Primary Pumps ATPases(2) | AT1G12840 | 76.8 | 9.1e-157 | 550.1 | |
| Lsi11g01651 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 1.3e-117 | 419.5 | |
| Lsi07g01500 | . | 1 | 263 | Primary Pumps ATPases(2) | AT4G11150 | 64.8 | 2.1e-79 | 292.4 | |
| Lsi07g01500 | . | 1 | 263 | Primary Pumps ATPases(2) | AT3G08560 | 58.7 | 2.6e-69 | 258.8 | |
| Lsi07g01500 | . | 1 | 185 | Primary Pumps ATPases(2) | AT1G64200 | 74.0 | 7.7e-67 | 250.4 | |
| Lsi06g00109 | . | 1 | 145 | Primary Pumps ATPases(2) | AT4G02620 | 73.8 | 3.8e-54 | 207.6 | |
| Lsi03g01626 | . | 74 | 516 | Primary Pumps ATPases(2) | AT3G42050 | 80.1 | 1.5e-203 | 705.7 | |
| Lsi10g01308 | . | 1 | 808 | Primary Pumps ATPases(2) | AT2G28520 | 73.4 | 0.0e+00 | 1209.9 | |
| Lsi08g01352 | . | 1 | 800 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 1.9e-260 | 895.6 | |
| Lsi11g01128 | . | 10 | 745 | Primary Pumps ATPases(2) | AT2G28520 | 54.5 | 3.4e-225 | 778.5 | |
| Lsi08g01352 | . | 1 | 805 | Primary Pumps ATPases(2) | AT2G21410 | 66.4 | 0.0e+00 | 1081.6 | |
| Lsi11g01128 | . | 6 | 744 | Primary Pumps ATPases(2) | AT2G21410 | 64.9 | 2.4e-282 | 968.4 | |
| Lsi10g01308 | . | 9 | 812 | Primary Pumps ATPases(2) | AT2G21410 | 56.1 | 2.2e-264 | 908.7 | |
| Lsi08g01352 | . | 1 | 805 | Primary Pumps ATPases(2) | AT4G39080 | 66.4 | 4.5e-313 | 1070.5 | |
| Lsi11g01128 | . | 8 | 745 | Primary Pumps ATPases(2) | AT4G39080 | 66.8 | 3.9e-285 | 977.6 | |
| Lsi10g01308 | . | 9 | 812 | Primary Pumps ATPases(2) | AT4G39080 | 57.0 | 3.2e-263 | 904.8 | |
| Lsi04g02391 | . | 32 | 170 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 1.6e-61 | 232.3 | |
| Lsi08g01343 | . | 28 | 197 | Primary Pumps ATPases(2) | AT4G34720 | 80.6 | 1.3e-55 | 212.6 | |
| Lsi08g01342 | . | 28 | 217 | Primary Pumps ATPases(2) | AT4G34720 | 71.6 | 2.7e-53 | 204.9 | |
| Lsi08g01342 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 3.1e-53 | 204.5 | |
| Lsi08g01343 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Lsi04g02391 | . | 33 | 127 | Primary Pumps ATPases(2) | AT1G19910 | 98.9 | 4.8e-38 | 154.1 | |
| Lsi04g02391 | . | 33 | 170 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 1.7e-60 | 228.8 | |
| Lsi08g01343 | . | 28 | 197 | Primary Pumps ATPases(2) | AT4G38920 | 80.6 | 3.7e-55 | 211.1 | |
| Lsi08g01342 | . | 28 | 217 | Primary Pumps ATPases(2) | AT4G38920 | 71.6 | 7.7e-53 | 203.4 | |
| Lsi08g01343 | . | 2 | 197 | Primary Pumps ATPases(2) | AT1G75630 | 81.2 | 1.5e-68 | 256.1 | |
| Lsi08g01342 | . | 2 | 217 | Primary Pumps ATPases(2) | AT1G75630 | 77.3 | 9.4e-68 | 253.4 | |
| Lsi04g02391 | . | 33 | 170 | Primary Pumps ATPases(2) | AT1G75630 | 79.1 | 1.7e-53 | 206.1 | |
| Lsi08g01343 | . | 3 | 197 | Primary Pumps ATPases(2) | AT2G16510 | 83.1 | 4.1e-69 | 257.7 | |
| Lsi08g01342 | . | 3 | 217 | Primary Pumps ATPases(2) | AT2G16510 | 74.9 | 8.6e-67 | 250.0 | |
| Lsi04g02391 | . | 33 | 170 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 2.0e-60 | 228.8 | |
| Lsi08g01161 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.8 | 5.1e-72 | 267.7 | |
| Lsi04g02151 | . | 11 | 187 | Primary Pumps ATPases(2) | AT4G32530 | 76.5 | 8.7e-72 | 266.9 | |
| Lsi08g01161 | . | 6 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.1 | 3.9e-70 | 261.5 | |
| Lsi04g02151 | . | 4 | 187 | Primary Pumps ATPases(2) | AT2G25610 | 79.3 | 1.7e-68 | 256.1 | |
| Lsi03g01466 | . | 2 | 197 | Primary Pumps ATPases(2) | AT3G28710 | 85.6 | 9.3e-103 | 370.5 | |
| Lsi03g01466 | . | 2 | 197 | Primary Pumps ATPases(2) | AT3G28715 | 81.5 | 9.1e-95 | 344.0 | |
| Lsi02g01380 | . | 1 | 1098 | Primary Pumps ATPases(2) | AT1G07810 | 78.1 | 0.0e+00 | 1651.7 | |
| Lsi02g01380 | . | 22 | 1079 | Primary Pumps ATPases(2) | AT4G00900 | 63.8 | 0.0e+00 | 1302.3 | |
| Lsi08g01538 | . | 1 | 1021 | Primary Pumps ATPases(2) | AT1G10130 | 80.4 | 0.0e+00 | 1590.9 | |
| Lsi02g01380 | . | 1 | 1098 | Primary Pumps ATPases(2) | AT1G07670 | 77.8 | 0.0e+00 | 1651.7 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000593 | 4 | 3 | 2 | 4 | 4 | 2 | 6 | 2 | 1 | 3 | 2 | 3 | 4 | 3 | 3 | 5 | 3 | 7 | 5 | 3 | 3 | 4 | 3 | 3 | 2 | 3 | 3 | 6 | 3 | 3 | 102 |