Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01343 ATGTCGTCAACGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGGACGGCAAAGAGCGGGGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCTGAATTGGTGATGAAGTCCATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGTATGATTCTGCTATTTTTGACTTCGGTGAAGATACTTTGGTTGAAACTTTGTTATCAGAATCTATGTCGCCATGTTCAAGCAGTGGCGTGGGATTGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCGGAAGCACTTGCCCTTTATGGACTTATTGTTGGTATCATTCTCTCCTCCCGAGCTGGTCAGTCAAGAGCTGATTAA 594 48.82 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYDSAIFDFGEDTLVETLLSESMSPCSSSGVGLANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21729053 21730822 + Lsi08G013430.1 Lsi08g01343 669269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01343 197 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lsi08g01343 197 SUPERFAMILY F1F0 ATP synthase subunit C 87 123 IPR035921 -
Lsi08g01343 197 Pfam ATP synthase subunit C 149 187 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi08g01343 197 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi08g01343 197 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 151 197 - -
Lsi08g01343 197 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 124 - -
Lsi08g01343 197 Gene3D - 11 144 IPR035921 -
Lsi08g01343 197 Gene3D - 145 194 IPR035921 -
Lsi08g01343 197 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 188 - -
Lsi08g01343 197 SUPERFAMILY F1F0 ATP synthase subunit C 153 188 IPR035921 -
Lsi08g01343 197 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Lsi08g01343 197 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01343 197 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01343 197 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01343 197 PANTHER V-TYPE PROTON ATPASE SUBUNIT C5 151 197 - -
Lsi08g01343 197 PANTHER V-TYPE PROTON ATPASE SUBUNIT C5 4 124 - -
Lsi08g01343 197 SUPERFAMILY F1F0 ATP synthase subunit C 14 77 IPR035921 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01343 K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit - egr:104418884 272.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02391 Lsi-Chr4:31039642 Lsi08g01343 Lsi-Chr8:21729053 8.84E-85 dispersed
Lsi08g01161 Lsi-Chr8:20269244 Lsi08g01343 Lsi-Chr8:21729053 1.99E-16 dispersed
Lsi08g01342 Lsi-Chr8:21724821 Lsi08g01343 Lsi-Chr8:21729053 2.04E-106 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1050 . . . . . . . . Cmo05g00293 Cmo12g00375 . . . Car12g00401 . . Cpe07g00380 Bhi04g00233 . . . Hepe10g0130 . . Cla08g01441 Cam08g1922 Cec08g1497 . Clacu08g1612 . Cre08g1398 . . Cone17ag1386 Cone20ag0095 . . . Cme03g01900 Blo17g00753 Blo18g00785 Bda08g01232 Bda01g01524 Bpe02g01721 Bpe05g00130 Bma01g00735 Bma05g00155 . . . Cma12g00425 Cma05g00287 Car05g00237 . Cpe11g00238 . . . . . . . . . . . . . . . Lsi08g01343 Csa02g02112 Chy03g01404 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT2G21410 66.4 0.0e+00 1081.6
Lsi11g01128 . 6 744 Primary Pumps ATPases(2) AT2G21410 64.9 2.4e-282 968.4
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT2G21410 56.1 2.2e-264 908.7
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT4G39080 66.4 4.5e-313 1070.5
Lsi11g01128 . 8 745 Primary Pumps ATPases(2) AT4G39080 66.8 3.9e-285 977.6
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT4G39080 57.0 3.2e-263 904.8
Lsi04g02391 . 32 170 Primary Pumps ATPases(2) AT4G34720 100.0 1.6e-61 232.3
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G34720 80.6 1.3e-55 212.6
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G34720 71.6 2.7e-53 204.9
Lsi08g01343 . 2 197 Primary Pumps ATPases(2) AT1G75630 81.2 1.5e-68 256.1
Lsi08g01342 . 2 217 Primary Pumps ATPases(2) AT1G75630 77.3 9.4e-68 253.4
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT1G75630 79.1 1.7e-53 206.1
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi08g01342 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Lsi08g01343 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Lsi04g02391 . 33 127 Primary Pumps ATPases(2) AT1G19910 98.9 4.8e-38 154.1
Lsi08g01161 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.9e-70 261.5
Lsi04g02151 . 4 187 Primary Pumps ATPases(2) AT2G25610 79.3 1.7e-68 256.1
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT4G38920 100.0 1.7e-60 228.8
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G38920 80.6 3.7e-55 211.1
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G38920 71.6 7.7e-53 203.4
Lsi08g01161 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 5.1e-72 267.7
Lsi04g02151 . 11 187 Primary Pumps ATPases(2) AT4G32530 76.5 8.7e-72 266.9
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07810 78.1 0.0e+00 1651.7
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07670 77.8 0.0e+00 1651.7
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi02g01380 . 22 1079 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1302.3
Lsi06g00109 . 1 145 Primary Pumps ATPases(2) AT4G02620 73.8 3.8e-54 207.6
Lsi11g01217 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 2.0e-268 921.4
Lsi09g00869 . 105 471 Primary Pumps ATPases(2) AT1G12840 76.8 9.1e-157 550.1
Lsi11g01651 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.3e-117 419.5
Lsi03g01626 . 74 516 Primary Pumps ATPases(2) AT3G42050 80.1 1.5e-203 705.7
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi11g01217 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Lsi07g01500 . 1 185 Primary Pumps ATPases(2) AT1G64200 74.0 7.7e-67 250.4
Lsi11g01217 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 4.1e-266 913.7
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28715 81.5 9.1e-95 344.0
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT4G11150 64.8 2.1e-79 292.4
Lsi02g02834 . 1 626 Primary Pumps ATPases(2) AT1G78900 90.2 0.0e+00 1139.4
Lsi11g01217 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.3 2.0e-268 921.4
Lsi11g01217 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Lsi11g01217 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 4.1e-266 913.7
Lsi09g00869 . 105 471 Primary Pumps ATPases(2) AT1G12840 76.8 9.1e-157 550.1
Lsi11g01651 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.3e-117 419.5
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT4G11150 64.8 2.1e-79 292.4
Lsi07g01500 . 1 263 Primary Pumps ATPases(2) AT3G08560 58.7 2.6e-69 258.8
Lsi07g01500 . 1 185 Primary Pumps ATPases(2) AT1G64200 74.0 7.7e-67 250.4
Lsi06g00109 . 1 145 Primary Pumps ATPases(2) AT4G02620 73.8 3.8e-54 207.6
Lsi03g01626 . 74 516 Primary Pumps ATPases(2) AT3G42050 80.1 1.5e-203 705.7
Lsi10g01308 . 1 808 Primary Pumps ATPases(2) AT2G28520 73.4 0.0e+00 1209.9
Lsi08g01352 . 1 800 Primary Pumps ATPases(2) AT2G28520 56.3 1.9e-260 895.6
Lsi11g01128 . 10 745 Primary Pumps ATPases(2) AT2G28520 54.5 3.4e-225 778.5
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT2G21410 66.4 0.0e+00 1081.6
Lsi11g01128 . 6 744 Primary Pumps ATPases(2) AT2G21410 64.9 2.4e-282 968.4
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT2G21410 56.1 2.2e-264 908.7
Lsi08g01352 . 1 805 Primary Pumps ATPases(2) AT4G39080 66.4 4.5e-313 1070.5
Lsi11g01128 . 8 745 Primary Pumps ATPases(2) AT4G39080 66.8 3.9e-285 977.6
Lsi10g01308 . 9 812 Primary Pumps ATPases(2) AT4G39080 57.0 3.2e-263 904.8
Lsi04g02391 . 32 170 Primary Pumps ATPases(2) AT4G34720 100.0 1.6e-61 232.3
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G34720 80.6 1.3e-55 212.6
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G34720 71.6 2.7e-53 204.9
Lsi08g01342 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Lsi08g01343 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Lsi04g02391 . 33 127 Primary Pumps ATPases(2) AT1G19910 98.9 4.8e-38 154.1
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT4G38920 100.0 1.7e-60 228.8
Lsi08g01343 . 28 197 Primary Pumps ATPases(2) AT4G38920 80.6 3.7e-55 211.1
Lsi08g01342 . 28 217 Primary Pumps ATPases(2) AT4G38920 71.6 7.7e-53 203.4
Lsi08g01343 . 2 197 Primary Pumps ATPases(2) AT1G75630 81.2 1.5e-68 256.1
Lsi08g01342 . 2 217 Primary Pumps ATPases(2) AT1G75630 77.3 9.4e-68 253.4
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT1G75630 79.1 1.7e-53 206.1
Lsi08g01343 . 3 197 Primary Pumps ATPases(2) AT2G16510 83.1 4.1e-69 257.7
Lsi08g01342 . 3 217 Primary Pumps ATPases(2) AT2G16510 74.9 8.6e-67 250.0
Lsi04g02391 . 33 170 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-60 228.8
Lsi08g01161 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 5.1e-72 267.7
Lsi04g02151 . 11 187 Primary Pumps ATPases(2) AT4G32530 76.5 8.7e-72 266.9
Lsi08g01161 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.9e-70 261.5
Lsi04g02151 . 4 187 Primary Pumps ATPases(2) AT2G25610 79.3 1.7e-68 256.1
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28710 85.6 9.3e-103 370.5
Lsi03g01466 . 2 197 Primary Pumps ATPases(2) AT3G28715 81.5 9.1e-95 344.0
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07810 78.1 0.0e+00 1651.7
Lsi02g01380 . 22 1079 Primary Pumps ATPases(2) AT4G00900 63.8 0.0e+00 1302.3
Lsi08g01538 . 1 1021 Primary Pumps ATPases(2) AT1G10130 80.4 0.0e+00 1590.9
Lsi02g01380 . 1 1098 Primary Pumps ATPases(2) AT1G07670 77.8 0.0e+00 1651.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102