Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g01343 | ATGTCGTCAACGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGGACGGCAAAGAGCGGGGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCTGAATTGGTGATGAAGTCCATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGTATGATTCTGCTATTTTTGACTTCGGTGAAGATACTTTGGTTGAAACTTTGTTATCAGAATCTATGTCGCCATGTTCAAGCAGTGGCGTGGGATTGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCGGAAGCACTTGCCCTTTATGGACTTATTGTTGGTATCATTCTCTCCTCCCGAGCTGGTCAGTCAAGAGCTGATTAA | 594 | 48.82 | MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYDSAIFDFGEDTLVETLLSESMSPCSSSGVGLANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21729053 | 21730822 | + | Lsi08G013430.1 | Lsi08g01343 | 669269 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g01343 | 197 | TIGRFAM | V_ATP_synt_C: V-type ATPase, C subunit | 13 | 121 | IPR011555 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi08g01343 | 197 | SUPERFAMILY | F1F0 ATP synthase subunit C | 87 | 123 | IPR035921 | - | |
Lsi08g01343 | 197 | Pfam | ATP synthase subunit C | 149 | 187 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Lsi08g01343 | 197 | Pfam | ATP synthase subunit C | 17 | 76 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Lsi08g01343 | 197 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 151 | 197 | - | - | |
Lsi08g01343 | 197 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 4 | 124 | - | - | |
Lsi08g01343 | 197 | Gene3D | - | 11 | 144 | IPR035921 | - | |
Lsi08g01343 | 197 | Gene3D | - | 145 | 194 | IPR035921 | - | |
Lsi08g01343 | 197 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 89 | 188 | - | - | |
Lsi08g01343 | 197 | SUPERFAMILY | F1F0 ATP synthase subunit C | 153 | 188 | IPR035921 | - | |
Lsi08g01343 | 197 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 13 | 80 | - | - | |
Lsi08g01343 | 197 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 107 | 133 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi08g01343 | 197 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 56 | 80 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi08g01343 | 197 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 30 | 54 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Lsi08g01343 | 197 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C5 | 151 | 197 | - | - | |
Lsi08g01343 | 197 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C5 | 4 | 124 | - | - | |
Lsi08g01343 | 197 | SUPERFAMILY | F1F0 ATP synthase subunit C | 14 | 77 | IPR035921 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g02391 | Lsi-Chr4:31039642 | Lsi08g01343 | Lsi-Chr8:21729053 | 8.84E-85 | dispersed | |
Lsi08g01161 | Lsi-Chr8:20269244 | Lsi08g01343 | Lsi-Chr8:21729053 | 1.99E-16 | dispersed | |
Lsi08g01342 | Lsi-Chr8:21724821 | Lsi08g01343 | Lsi-Chr8:21729053 | 2.04E-106 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g01343 | K02155 | - | egr:104418884 | 272.322 |