Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01343 ATGTCGTCAACGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGGACGGCAAAGAGCGGGGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCTGAATTGGTGATGAAGTCCATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGTATGATTCTGCTATTTTTGACTTCGGTGAAGATACTTTGGTTGAAACTTTGTTATCAGAATCTATGTCGCCATGTTCAAGCAGTGGCGTGGGATTGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCGGAAGCACTTGCCCTTTATGGACTTATTGTTGGTATCATTCTCTCCTCCCGAGCTGGTCAGTCAAGAGCTGATTAA 594 48.82 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYDSAIFDFGEDTLVETLLSESMSPCSSSGVGLANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21729053 21730822 + Lsi08G013430.1 Lsi08g01343 669269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01343 197 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lsi08g01343 197 SUPERFAMILY F1F0 ATP synthase subunit C 87 123 IPR035921 -
Lsi08g01343 197 Pfam ATP synthase subunit C 149 187 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi08g01343 197 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lsi08g01343 197 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 151 197 - -
Lsi08g01343 197 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 124 - -
Lsi08g01343 197 Gene3D - 11 144 IPR035921 -
Lsi08g01343 197 Gene3D - 145 194 IPR035921 -
Lsi08g01343 197 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 188 - -
Lsi08g01343 197 SUPERFAMILY F1F0 ATP synthase subunit C 153 188 IPR035921 -
Lsi08g01343 197 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Lsi08g01343 197 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01343 197 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01343 197 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lsi08g01343 197 PANTHER V-TYPE PROTON ATPASE SUBUNIT C5 151 197 - -
Lsi08g01343 197 PANTHER V-TYPE PROTON ATPASE SUBUNIT C5 4 124 - -
Lsi08g01343 197 SUPERFAMILY F1F0 ATP synthase subunit C 14 77 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02391 Lsi-Chr4:31039642 Lsi08g01343 Lsi-Chr8:21729053 8.84E-85 dispersed
Lsi08g01161 Lsi-Chr8:20269244 Lsi08g01343 Lsi-Chr8:21729053 1.99E-16 dispersed
Lsi08g01342 Lsi-Chr8:21724821 Lsi08g01343 Lsi-Chr8:21729053 2.04E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01343 K02155 - egr:104418884 272.322