Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01346 ATGAACAAAATAATGGGAGGTGAAGAGCTAATACAGGGCGTCATTCACGATTCAAATGCTCTAGAAGAAACGATTCGTGTTTCTATTAGGTTAAGGCCTTTGAACGATAAGGAATTAGCTAAAAACGACTCGTCGGATTGGGAATGTATCAACAATAACTGTGTCGTTTTCAGAAGTACTTTACCGGAACGTTCTATGTTTCCCCAATCTTACACATTTGATAGAGTATTTGGGGTTGACAGTGCGACAAAGCAAGTTTATGAAGAAGGGGCCAAAGAAGTTGTTCTTTCTGTGGTCAATGGGATTAACTCAACAATTTTTGCATATGGACAAACAAGCAGTGGAAAGACTTTCACCATGAATGGAGTCACTCAATATTCTTTTTCAGCGATTGAGATATACAATGAAGCTGTTAGAGATCTCCTTAGCTTAGAAAATACCCCACTTAGACTGCTTGATGATCCTGAGAAAGGAACTGTTGTTGAGAAACTTACAGAGGAGATATTGAAAGACAGGAATCATCTCCAGGAGCTTCTTTCCTTCTTTCAAAGAAAGATTGGGGAGACGTCTCTGAATGAAACTAGCTCCAGATCCCATCAAATCCTGAGACTAACAATTGAAAGCTCCGCTCGCAAATACAAGAAGACTGAAAGTTCAAGCACTCTTACAGCTACAGTGGTAAAAAGAATATATAGCTCTATTCTTGGCAGAAGGAATGGGCACGTACCTTATAGAGATTCCAAGCTAACACGCATACTGCAGAATTCTCTTGGTGGAAATGGCCGAACGGCTATCATTTGTACTATGAGTCCTGCACATAGCCATGTCGAACAATCAAGAAATACATTGCTATTTGCTACTTGTGCAAAAGAGGTGAGTACAAATGCGCAAGTCAATGTGGTAGTTTCAGATAAGGCATTGGTGAAGCAGTTGCAAAAAGAGTTGGCTAGACTTGAGAGTGAGATGAAGAGCTTAAAACCACTTCCTGTCAAAGGTGATTCTACTTCATTATTGAAAGAGAAAGAACTTGTAATTGAACAGGAAAATAAATTGAATCAGGCTATGTATTGGTACCCTTCTACTATACTTTTTCTGCTTCTGAATTTGCTTAAACAGCCTATATGTATTTTCAAACTTGGAAAGGAAAAAAAAAGAAATGGAATGAACTGCACCCAACTAGCAGGCAAGGATTGCTCTTTATTATCTTGTTTACGCGACTATTTGGACGCTCATATGGACAAAGAGATAAAGGAATTGACTCGGCAACGTGATCTTGCTCAATATCGAATCGAGAATTTATTGCATTCGGTTGGAGAAGATAGGATATTTAAGCTAAGTGAAAATACAGTACAAACAATACCAGATCTAGTTGACCTAGATCTAGATCTACGTTCTGATGACTCAAGTCTCAAAACGTTTGACACATTTACTGCACATGAAGAGAATAGCCCTCACAAGATGGATCCTCTATTCACTATGAGTCATGAGGACAATTTTCTACTAGATAGCAGTACTCCTGAATTGGCTGGGCCTGATCCTTATCAGGACTGGGAAGAGATTGCTCAACGTGTTCATTCAAATTCTGAAGATGGGTGTAAGGATGTTCAATGCATTGAACTGGAAGAATCAAAAGAATCACTAGATGAAAATGGTGATTTAACTTTAGCTAGATTGGAAGACAATGAAGGACAGATGATTAGTAGTTTTGGCACTAATCAAGTGACATCCCCGCAAAGGAAGAATAAGGAGATAATTACAATCAACAAAGATTATACTTATGATGGTTTTATGCCAAAAACAGCTGAGATGCAGAAAACATTGAATTGTATTTTAAATCTTTATCCTTCTGAGCAATCTTTCAGCTCAATTGAAGCAGCGAAATCTCGTTTTCAGAACTTAAAGTTGGCCAGAAGCAAAAGTTGTTTGACTGTTCTAATGACCATCCCACCTTCTACTTTGATTGAAAAGGCAGAACAGTATGAGAAAACTCAAACCGTTGGATCTGACGTGAACTTCTCTGGACAAGCAGAAGGTAGCCGGAGAAAGCGCGGTTTAAGCTGTGGAAATTTGGAGGGAAATTTGGACACCAAGGACTCACATTCTGTATGTAGTCACTGTTCGGAAGCCAAGACTTTACAAATAATTGATGAAGATGATGATGATAATACTAGTGTTCTCAACTTTGCGACTGGAAAAAAAGGAAAGGGCAAAAGTCGGATAAAGAAGCGATCTGGTTCGAGGCTTGGGAGGGTCTCCAAAAAGGAAGAACCTAAAGAAACCACACAAGAAGTTCACATGGAAGAGGCACAAGATCTTCAGGCTCATTCTGAGTGGGTTCTAGAGTTCCAAGGTCAACAAAGAGATATAATTGAGCTTTGGGATGCTTGCAATGTACCATTGGTCCACAGATCTTATTTCTTCATCCTTTTTAAAGGAGACCCTTCTGACGCTGTATACATGGAAGTAGAGCTTAGAAGGTTGTTCTTTATAAGGGAAGCCATTTCTCGATCAATCAATGCATCGGGAAGGAGCGACATCATCACGCAAGTTTCGAGGTACAGTTCCTTCCATCTAAGACGACTTTTAACCAATCCATATCCATATTTAACCAAATTCCTAAGCTCATCCAATGTGATTATTCAGTACTATAATACTTTCTGTAAATTGGACCACAGCTTGAAGGCTCTAAACCGCGAGAGAGAAATGTTGGCGAGGCGAATGAAAAAGAAGTTCTCAGTAAAAGAAAGAGACGCCCTTTACCAGAAGTGGGGTATTGACTTGAAGACGAAGCAACGAAGCATACAATTGGCACGAATGCTTTGGTCGAGAACAAAGGATTTTGACCATATACACGAAAGTGCTGCCCTTGTGGCAAAGCTCATTGGATTTGTGGAACCTTCTCAGGTCTCTAGGGAGATGTTTGGGCTATCCTTCTCTCTCCAATCCTTAGATCACAGATCTTTTCCCTGGAAAAGAAACATGTCTCTTCCTTTT 2994 39.65 MNKIMGGEELIQGVIHDSNALEETIRVSIRLRPLNDKELAKNDSSDWECINNNCVVFRSTLPERSMFPQSYTFDRVFGVDSATKQVYEEGAKEVVLSVVNGINSTIFAYGQTSSGKTFTMNGVTQYSFSAIEIYNEAVRDLLSLENTPLRLLDDPEKGTVVEKLTEEILKDRNHLQELLSFFQRKIGETSLNETSSRSHQILRLTIESSARKYKKTESSSTLTATVVKRIYSSILGRRNGHVPYRDSKLTRILQNSLGGNGRTAIICTMSPAHSHVEQSRNTLLFATCAKEVSTNAQVNVVVSDKALVKQLQKELARLESEMKSLKPLPVKGDSTSLLKEKELVIEQENKLNQAMYWYPSTILFLLLNLLKQPICIFKLGKEKKRNGMNCTQLAGKDCSLLSCLRDYLDAHMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKLSENTVQTIPDLVDLDLDLRSDDSSLKTFDTFTAHEENSPHKMDPLFTMSHEDNFLLDSSTPELAGPDPYQDWEEIAQRVHSNSEDGCKDVQCIELEESKESLDENGDLTLARLEDNEGQMISSFGTNQVTSPQRKNKEIITINKDYTYDGFMPKTAEMQKTLNCILNLYPSEQSFSSIEAAKSRFQNLKLARSKSCLTVLMTIPPSTLIEKAEQYEKTQTVGSDVNFSGQAEGSRRKRGLSCGNLEGNLDTKDSHSVCSHCSEAKTLQIIDEDDDDNTSVLNFATGKKGKGKSRIKKRSGSRLGRVSKKEEPKETTQEVHMEEAQDLQAHSEWVLEFQGQQRDIIELWDACNVPLVHRSYFFILFKGDPSDAVYMEVELRRLFFIREAISRSINASGRSDIITQVSRYSSFHLRRLLTNPYPYLTKFLSSSNVIIQYYNTFCKLDHSLKALNREREMLARRMKKKFSVKERDALYQKWGIDLKTKQRSIQLARMLWSRTKDFDHIHESAALVAKLIGFVEPSQVSREMFGLSFSLQSLDHRSFPWKRNMSLPF 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21749524 21756033 - Lsi08G013460.1 Lsi08g01346 669272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01346 998 PANTHER KINESIN-LIKE PROTEIN KIN-7J 20 231 - -
Lsi08g01346 998 PANTHER CENTROMERE PROTEIN E 884 995 - -
Lsi08g01346 998 MobiDBLite consensus disorder prediction 749 768 - -
Lsi08g01346 998 PANTHER CENTROMERE PROTEIN E 237 350 - -
Lsi08g01346 998 PANTHER CENTROMERE PROTEIN E 20 231 - -
Lsi08g01346 998 PANTHER KINESIN-LIKE PROTEIN KIN-7J 410 855 - -
Lsi08g01346 998 Coils Coil 301 328 - -
Lsi08g01346 998 PANTHER KINESIN-LIKE PROTEIN KIN-7J 884 995 - -
Lsi08g01346 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 315 IPR027417 -
Lsi08g01346 998 Pfam Domain of unknown function (DUF3490) 869 980 IPR021881 -
Lsi08g01346 998 Pfam Domain of unknown function (DUF3490) 781 853 IPR021881 -
Lsi08g01346 998 Pfam Kinesin motor domain 231 292 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01346 998 Pfam Kinesin motor domain 126 221 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01346 998 Pfam Kinesin motor domain 30 123 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01346 998 Gene3D Kinesin motor domain 223 323 IPR036961 -
Lsi08g01346 998 ProSiteProfiles Kinesin motor domain profile. 24 292 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01346 998 PANTHER CENTROMERE PROTEIN E 410 855 - -
Lsi08g01346 998 PANTHER KINESIN-LIKE PROTEIN KIN-7J 237 350 - -
Lsi08g01346 998 MobiDBLite consensus disorder prediction 731 768 - -
Lsi08g01346 998 PRINTS Kinesin heavy chain signature 189 206 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01346 998 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01346 998 PRINTS Kinesin heavy chain signature 242 263 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01346 998 Coils Coil 416 436 - -
Lsi08g01346 998 MobiDBLite consensus disorder prediction 734 748 - -
Lsi08g01346 998 SMART kinesin_4 22 300 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi08g01346 998 Gene3D Kinesin motor domain 126 222 IPR036961 -
Lsi08g01346 998 Gene3D Kinesin motor domain 19 125 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01346 K11498 CENPE; centromeric protein E - csv:101212680 1341.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01346 Lsi-Chr8:21749524 Lsi11g01139 Lsi-Chr11:19905923 3.85E-14 dispersed
Lsi02g00207 Lsi-Chr2:1725699 Lsi08g01346 Lsi-Chr8:21749524 9.08E-39 transposed
Lsi07g00269 Lsi-Chr7:2934691 Lsi08g01346 Lsi-Chr8:21749524 5.36E-152 transposed
Lsi10g00409 Lsi-Chr10:6214377 Lsi08g01346 Lsi-Chr8:21749524 1.77E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32