Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01351 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTTTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAACAATCATCCTCAACCAAATCCTTCTCTTACAAACCATTTGTCCTTTGGCGTTGGTCCCAGCCGCCGCAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGCCCTGCCGCTGCTGCCTTCGCCGCTGCCTCTGCTGCTACTGCTGGTGGCATGAATTGCCAAGACTGTGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACTCACGTGAAAAGCACGTGGGTTCCGGCTGCCAAACGCCGTGAGAGACAACAGCAAATTGCCGCTTTACAACAGCAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCACTCTGCCGCCGCTGCCGCCGCCTCCGCTTGCCCTCGTTTGCCCTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAACTCCGTTACACTGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGACGGATCAACACACCCACTTAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCCACTAGTACCAACCCCTCCTCCGCTGCCGCTGCGGCCGCTCCGTTGCTTGACCCTTCTATATATCCAGCTCCTCTCAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1011 52.42 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNNHPQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETHSAAAAAASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPELRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSSAAAAAAPLLDPSIYPAPLNAFMAGTQFFPPSRS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21804740 21806139 + Lsi08G013510.1 Lsi08g01351 669277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01351 336 MobiDBLite consensus disorder prediction 1 24 - -
Lsi08g01351 336 MobiDBLite consensus disorder prediction 265 298 - -
Lsi08g01351 336 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 333 IPR007818 GO:0003700|GO:0006355
Lsi08g01351 336 Pfam Domain of unknown function (DUF702) 110 260 - -
Lsi08g01351 336 MobiDBLite consensus disorder prediction 271 298 - -
Lsi08g01351 336 MobiDBLite consensus disorder prediction 168 188 - -
Lsi08g01351 336 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 112 154 IPR006510 -
Lsi08g01351 336 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 211 259 IPR006511 -
Lsi08g01351 336 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 333 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01713 Lsi08g01351 CCT
Lsi04g01713 Lsi08g01351 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00815 Lsi-Chr3:12302971 Lsi08g01351 Lsi-Chr8:21804740 2.97E-24 dispersed
Lsi07g00230 Lsi-Chr7:2538914 Lsi08g01351 Lsi-Chr8:21804740 3.10E-51 dispersed
Lsi08g01351 Lsi-Chr8:21804740 Lsi10g01087 Lsi-Chr10:15171645 4.53E-34 dispersed
Lsi01g00631 Lsi-Chr1:5081554 Lsi08g01351 Lsi-Chr8:21804740 5.51E-75 wgd
Lsi04g01713 Lsi-Chr4:24486446 Lsi08g01351 Lsi-Chr8:21804740 7.82E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25810 PF05142 DUF702 8.40E-68 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01351 - - csv:101213154 534.258