Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01352 ATGGATCTGCTGCGATCAGAGCCGATGCAATTGGTGCAGCTAATCATTCCTAATGAATCGGCGCACCGGATGATTTCCTACCTCGGCGACCTCGGTCTCTTCCAATTCAACGATGTGAGTCACATTGCATTGGAAATGATCTTCTGGGAGCAAATGGCAAGGGCTGGTTTATTGCCGTCATCAAATTCTCTTGGGGCTCCTGATTTTGATCTGGATAATTTGGAGGTTAAACTTGGCGAATTTGAGTCAGAGCTGTTAGAGATAAATGACAACAACGAGAAGTTACGACGCAATTATAGTGAGCTATTGGAATATAAGCTTGTGCTCGAGAAGGTTGGTGAGTTTTTCCATCTAGCTCAAAGCATAGCTGCAGCTCAGCAAAGAGAACTGGAAGTGCAGCAAAACGGGGAAGGATCCATTGACATTCCCTTATTATTGGAACAAGAAATGACAATCGATCCAACGAAACAAGTTAAACTAGGATATATCAGTGGTCTAGTTCCGAGAGAAAAGTCAATGGCTTTTGAGAGGATCTTGTTTCGTTCAACTAGGGGCAATGTGCATCTGAGACAAGCTGTGGTTGATGGTTCTGTCACTGATCCTGTATCTGGGGAGAAGGTCGAGAAAAATGTGTTCGTCATATTTTATTCTGGAGATAGAGCAAAGAGTAAAATTCTGAAAATATGCGAAGCTTTTGGTGCAAACCGTTACTCATTCACTGATGACCTGGGCAAACAATTTCAGATGATTACAGAGGTCGAATTTGAAGTGGCTGGATGGTGTATAAAACTGAAGGTGCAGGATGGTGTATTTTGTGTAACATCGAGATCATTGCAATTACTGACAGTCTTCTCGAAATCCAAGGTGTCTGGAAAACTCTCTGAATTGAAGACTACCATTGATATGGGGCAACTGCACCGAAGTAAACTCTTGCAGACGATTGGCCAACAATATGAGCTGTGGAATCTTCTGGTGAAGAAGGAAAAATCTGTTTACCACACTTTGAATATGCTCAGTGTTGATGTAACAAAGAAATGCCTTGTAGGTGAAGGTTGGTGTCCTGTTTTTGCAACAAATCAGATTCAATGTGTGATGCAAAAGGCAACCCTTGACAGCAAATCACAAATTGAGGCTATCTTTCATGTTCTGCATACAAAGGAAGCACCACCAACATATTTTCGCACAAACAAATTTACTTCTTCGTTTCAAGAAATTGTGGATGCATATGGGGTTGCTAAGTATCAGGAAGCAAATCCTGGAGTCTACACTATTGTCACATTCCCTTTCCTATTTGCTGTAATGTTTGGTGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATTTTATAATAAGGGAGAAGAAATTTTCCAGCCAGAAACTTGGAGATATCATTGAAATGACTTTTGGGGGTCGTTATGTTATCATGATGATGGCACTTTTTTCAATCTACACAGGACTGATTTATAATGAATTCTTTTCTGTCCCATTTGAACTGTTTGGGCCTTCTGCATACGGTTGTCGTGATACTTCATGCAGGGATGCTACCACCATTGGTTTAATAAAGGTTCGTGATACATATCCATTTGGTGTGGATCCCAAGTGGCATGGCACGCGAAGTGAGTTACCTTTTCTCAACTCTTTGAAGATGAAGATGTCTATCCTAATGGGAGTAGCTCAAATGAATCTAGGAATTATACTGAGCTACTTCAATGCAAAATTCTTTGGAGAAAACATTAACATCTGGTACCAATTTGTTCCTCAGATGATATTCTTAAACAGCTTATTTGGTTACCTCTCACTTCTCATAATTGTAAAATGGTACTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATATATGTTCTTGAGTCCTACTGATGATCTAGGTGAAAATCAGCTTTTCCCAGGACAGAAGTTTCTTCAGCTTCTGTTACTTCTGTCTGCCCTCAGTGCCGTGCCATGGATGTTATTTCCCAAGCCTTTTCTTTTGAAGAAACAAAATGAAGAAAGGCACCAAGGTCAATCCTACTCCGTACTTCACAGCACAGATGACAATCATGAAATGGAAAAACACCATGGTTCCCATCGCCATGAGGAGTTTGATTTCAGTGAGGTTTTTGTACACCAACTTATACATACCATAGAGTTTGTTCTTGGTGCAGTCTCTAACACAGCATCCTATCTTCGTCTATGGGCCCTCAGCTTCAATAGTTTGATCATCCGAATAGTAGGAATAGCCGTTTTCATTTGTGCAACTGTCGGAGTTTTACTAATTATGGAAACTCTAAGTGCATTCCTACACGCCTTGAGGCTCCACTGGGTGGAGTTTCAGAACAAATTCTATGCAGGTGATGGATTCAAATTTTCTCCCTTCTCGTTTTCGTTGCTTCGGGAGGAGGATGAGTGA 2418 40.98 MDLLRSEPMQLVQLIIPNESAHRMISYLGDLGLFQFNDVSHIALEMIFWEQMARAGLLPSSNSLGAPDFDLDNLEVKLGEFESELLEINDNNEKLRRNYSELLEYKLVLEKVGEFFHLAQSIAAAQQRELEVQQNGEGSIDIPLLLEQEMTIDPTKQVKLGYISGLVPREKSMAFERILFRSTRGNVHLRQAVVDGSVTDPVSGEKVEKNVFVIFYSGDRAKSKILKICEAFGANRYSFTDDLGKQFQMITEVEFEVAGWCIKLKVQDGVFCVTSRSLQLLTVFSKSKVSGKLSELKTTIDMGQLHRSKLLQTIGQQYELWNLLVKKEKSVYHTLNMLSVDVTKKCLVGEGWCPVFATNQIQCVMQKATLDSKSQIEAIFHVLHTKEAPPTYFRTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIIREKKFSSQKLGDIIEMTFGGRYVIMMMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDTSCRDATTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILMGVAQMNLGIILSYFNAKFFGENINIWYQFVPQMIFLNSLFGYLSLLIIVKWYSGSQADLYHVMIYMFLSPTDDLGENQLFPGQKFLQLLLLLSALSAVPWMLFPKPFLLKKQNEERHQGQSYSVLHSTDDNHEMEKHHGSHRHEEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSFNSLIIRIVGIAVFICATVGVLLIMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPFSFSLLREEDE 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21826402 21836696 + Lsi08G013520.1 Lsi08g01352 669278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01352 805 PIRSF ATP6V0A1 739 805 IPR026028 GO:0000220|GO:0046961
Lsi08g01352 805 PIRSF ATP6V0A1 1 60 IPR026028 GO:0000220|GO:0046961
Lsi08g01352 805 PIRSF ATP6V0A1 50 741 IPR026028 GO:0000220|GO:0046961
Lsi08g01352 805 PANTHER VACUOLAR PROTON ATPASES 287 805 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi08g01352 805 PANTHER VACUOLAR PROTON ATPASES 1 259 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi08g01352 805 Pfam V-type ATPase 116kDa subunit family 70 256 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi08g01352 805 Pfam V-type ATPase 116kDa subunit family 287 797 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi08g01352 805 Coils Coil 71 105 - -
Lsi08g01352 805 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1 259 - -
Lsi08g01352 805 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 287 805 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01308 Lsi-Chr10:17275742 Lsi08g01352 Lsi-Chr8:21826402 0 transposed
Lsi11g01128 Lsi-Chr11:19704107 Lsi08g01352 Lsi-Chr8:21826402 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01352 K02154 - csv:101209817 1347.41