Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01353 ATGGAGCGCCTCACTGTAATAGCTCTCTTCCTTACCATTCTACTATCGGCGACGGTAGCCTACGGTGTATCTTCTGATCAAATCAACGGCGCCGAAAGCGACGGTGAAGATCTTCTGATTCGTCAAGTCGTCTCCGGTGCCGATGATCGTCTCCTAACCGCCGAGGAACACTTCCAGAACTTCAAACTCAAGTTCGGAAAGACCTACGCCACCAAAGAGGAGCACGATTACAGGTTCCGTGTCTTCAAGGCTAACCTCCGCAAAGCCAAGCGCCACCAGAAGCTCGATCCAGACGCTGTCCATGGCGTCACTCGGTTTTCCGATCTCACCGAGTCCGAGTTCCGTACAAACTTCGTCGGATTGAATCGGCTCCGTCTTCCTGCTGATGCTCAGAAGGCTCCGATCCTTCCTACAGACGACCTAGCCTCCGATTTCGATTGGCGCGACCAAGGTGCCGTCACGCCGGTCAAAGATCAGGGTTCCTGTGGCTCGTGCTGGTCTTTTAGTGCCGTTGGAGCGCTGGAGGGAGCTAATTTCTTGTCAACTGGAAATCTTGTTAGTCTGAGTGAGCAACAGCTTGTGGATTGTGATCACGAGTGTGATCCTGAGGAAGCTGGTGCATGCGACGCAGGGTGCGGCGGCGGACTAATGAACTCAGCTTTTGAGTACATTTTGAAAGCAGGTGGATTAGAGAAAGAGGAGGACTATCCTTACACCGGCACGGATCGTGGTCCTTGCAAATTCCAAAATGGCAAAATTGCTGCTTCTGCAGCCAACTTCAGTGTCATTTCTAATGATGCCGAACAAATTGCAGCAAACTTGGTCAAGAATGGCCCTTTAGCAATTGGAATCAATGCAGTTTTCATGCAAACATACATAAAGGGAGTTTCATGCCCATACATATGCTCTAAACGAAATCTAGATCATGGAGTTCTGCTTGTAGGGTATGGATCTGCAGGCTTTGCTCCGATACGGTTCAAGGAAAAGCCCTACTGGATCATAAAGAATTCGTGGGGTGAAAACTGGGGAGAAAATGGCTACTACTTAATCTGCAAGGGCAAGAATATCTGTGGATCCGAGTCGATGGTTTCGTCCGTGGCTGCTACCTCAAACTGA 1116 49.82 MERLTVIALFLTILLSATVAYGVSSDQINGAESDGEDLLIRQVVSGADDRLLTAEEHFQNFKLKFGKTYATKEEHDYRFRVFKANLRKAKRHQKLDPDAVHGVTRFSDLTESEFRTNFVGLNRLRLPADAQKAPILPTDDLASDFDWRDQGAVTPVKDQGSCGSCWSFSAVGALEGANFLSTGNLVSLSEQQLVDCDHECDPEEAGACDAGCGGGLMNSAFEYILKAGGLEKEEDYPYTGTDRGPCKFQNGKIAASAANFSVISNDAEQIAANLVKNGPLAIGINAVFMQTYIKGVSCPYICSKRNLDHGVLLVGYGSAGFAPIRFKEKPYWIIKNSWGENWGENGYYLICKGKNICGSESMVSSVAATSN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21835504 21843033 - Lsi08G013530.1 Lsi08g01353 669279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01353 371 Pfam Papain family cysteine protease 142 365 IPR000668 GO:0006508|GO:0008234
Lsi08g01353 371 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 32 367 - -
Lsi08g01353 371 CDD Peptidase_C1A 145 366 IPR039417 -
Lsi08g01353 371 PRINTS Papain cysteine protease (C1) family signature 159 174 IPR000668 GO:0006508|GO:0008234
Lsi08g01353 371 PRINTS Papain cysteine protease (C1) family signature 309 319 IPR000668 GO:0006508|GO:0008234
Lsi08g01353 371 PRINTS Papain cysteine protease (C1) family signature 331 337 IPR000668 GO:0006508|GO:0008234
Lsi08g01353 371 Gene3D Cysteine proteinases 34 367 - -
Lsi08g01353 371 SMART pept_c1 141 367 IPR000668 GO:0006508|GO:0008234
Lsi08g01353 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 331 350 IPR025661 -
Lsi08g01353 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Lsi08g01353 371 PANTHER CYSTEINE PROTEASE RD19C-RELATED 32 367 - -
Lsi08g01353 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 159 170 IPR000169 -
Lsi08g01353 371 SMART Inhibitor_I29_2 58 114 IPR013201 -
Lsi08g01353 371 Pfam Cathepsin propeptide inhibitor domain (I29) 58 114 IPR013201 -
Lsi08g01353 371 SUPERFAMILY Cysteine proteinases 55 366 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01353 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101210316 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00091 Lsi-Chr4:1061810 Lsi08g01353 Lsi-Chr8:21835504 1.45E-129 dispersed
Lsi08g01353 Lsi-Chr8:21835504 Lsi03g00521 Lsi-Chr3:6054071 3.13E-61 dispersed
Lsi10g00405 Lsi-Chr10:6154848 Lsi08g01353 Lsi-Chr8:21835504 0 wgd
Lsi11g01127 Lsi-Chr11:19698580 Lsi08g01353 Lsi-Chr8:21835504 4.06E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102