Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01358 ATGTTGAAATCATCCTCCAACAACAACAACAACAAAAGACCCTCTTCAAGAAAGGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCTTGTACTTATAAAGGTGTTCGTCAAAGAACCTGGGGCAAATGGGTTGCTGAAATTCGAGAGCCAAATCGTGGAGCTCGTCTTTGGCTTGGTACTTTTGATACTTCTCATGATGCTGCTTTGGCTTATGACAATGCTGCTCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTTCCTCATCTTTCTCCTCTTTCTGCTTCTGCTTCTGCTTCTGCTTCTCTTGCTGCTGCTGCTTCTTCTTCTTCTGATAATGTTGCTGCTAATGCTAATTCAAATGCTATTTCCAATGCCATTGTGGAAGATGTTGCGTCCTCTGTTTCTCATGAAAACAATAACAACACTCTATTGCCTAAGAAGAGATTTAGGGAGGAAGAGGAAGAACAAATTGGGGGGCTTTGGAGGGCTATGAGTATTAATTTAGATGATTCTATTTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCTGTTGTTATGGAACATCATCAGGATCATCCTCATCATCAAGGCTTTTCTGCTGCTAATTTGATGGATACAAATGGAAATGGTGGATGTGGATGGGATACACTTCAATGGTGTTTATGA 675 41.48 MLKSSSNNNNNKRPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPHLSPLSASASASASLAAAASSSSDNVAANANSNAISNAIVEDVASSVSHENNNNTLLPKKRFREEEEEQIGGLWRAMSINLDDSIWVEAAMSLDFPVVMEHHQDHPHHQGFSAANLMDTNGNGGCGWDTLQWCL 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21900887 21901561 - Lsi08G013580.1 Lsi08g01358 669284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01358 224 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Lsi08g01358 224 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Lsi08g01358 224 CDD AP2 32 91 IPR001471 GO:0003700|GO:0006355
Lsi08g01358 224 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Lsi08g01358 224 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Lsi08g01358 224 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Lsi08g01358 224 MobiDBLite consensus disorder prediction 1 16 - -
Lsi08g01358 224 MobiDBLite consensus disorder prediction 1 32 - -
Lsi08g01358 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 209 - -
Lsi08g01358 224 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Lsi08g01358 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 9 209 - -
Lsi08g01358 224 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01710 Lsi08g01358 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01580 Lsi-Chr1:13999060 Lsi08g01358 Lsi-Chr8:21900887 2.29E-31 dispersed
Lsi03g00291 Lsi-Chr3:3529309 Lsi08g01358 Lsi-Chr8:21900887 3.02E-35 dispersed
Lsi08g01358 Lsi-Chr8:21900887 Lsi10g00883 Lsi-Chr10:13136227 1.30E-24 dispersed
Lsi03g01699 Lsi-Chr3:28310174 Lsi08g01358 Lsi-Chr8:21900887 1.03E-33 transposed
Lsi04g01710 Lsi-Chr4:24446110 Lsi08g01358 Lsi-Chr8:21900887 3.45E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25811 PF00847 AP2 2.90E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01358 - - csv:101213875 255.373