Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g01358 | ATGTTGAAATCATCCTCCAACAACAACAACAACAAAAGACCCTCTTCAAGAAAGGGTTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCTTGTACTTATAAAGGTGTTCGTCAAAGAACCTGGGGCAAATGGGTTGCTGAAATTCGAGAGCCAAATCGTGGAGCTCGTCTTTGGCTTGGTACTTTTGATACTTCTCATGATGCTGCTTTGGCTTATGACAATGCTGCTCGTCGTCTTTATGGCTCTGATGCTAAACTCAATCTTCCTCATCTTTCTCCTCTTTCTGCTTCTGCTTCTGCTTCTGCTTCTCTTGCTGCTGCTGCTTCTTCTTCTTCTGATAATGTTGCTGCTAATGCTAATTCAAATGCTATTTCCAATGCCATTGTGGAAGATGTTGCGTCCTCTGTTTCTCATGAAAACAATAACAACACTCTATTGCCTAAGAAGAGATTTAGGGAGGAAGAGGAAGAACAAATTGGGGGGCTTTGGAGGGCTATGAGTATTAATTTAGATGATTCTATTTGGGTTGAAGCAGCTATGTCTTTGGATTTTCCTGTTGTTATGGAACATCATCAGGATCATCCTCATCATCAAGGCTTTTCTGCTGCTAATTTGATGGATACAAATGGAAATGGTGGATGTGGATGGGATACACTTCAATGGTGTTTATGA | 675 | 41.48 | MLKSSSNNNNNKRPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDNAARRLYGSDAKLNLPHLSPLSASASASASLAAAASSSSDNVAANANSNAISNAIVEDVASSVSHENNNNTLLPKKRFREEEEEQIGGLWRAMSINLDDSIWVEAAMSLDFPVVMEHHQDHPHHQGFSAANLMDTNGNGGCGWDTLQWCL | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21900887 | 21901561 | - | Lsi08G013580.1 | Lsi08g01358 | 669284 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g01358 | 224 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g01358 | 224 | Pfam | AP2 domain | 33 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g01358 | 224 | CDD | AP2 | 32 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g01358 | 224 | Gene3D | AP2/ERF domain | 33 | 91 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi08g01358 | 224 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g01358 | 224 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi08g01358 | 224 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Lsi08g01358 | 224 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lsi08g01358 | 224 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 9 | 209 | - | - | |
Lsi08g01358 | 224 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677 | |
Lsi08g01358 | 224 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 9 | 209 | - | - | |
Lsi08g01358 | 224 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01710 | Lsi08g01358 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01580 | Lsi-Chr1:13999060 | Lsi08g01358 | Lsi-Chr8:21900887 | 2.29E-31 | dispersed | |
Lsi03g00291 | Lsi-Chr3:3529309 | Lsi08g01358 | Lsi-Chr8:21900887 | 3.02E-35 | dispersed | |
Lsi08g01358 | Lsi-Chr8:21900887 | Lsi10g00883 | Lsi-Chr10:13136227 | 1.30E-24 | dispersed | |
Lsi03g01699 | Lsi-Chr3:28310174 | Lsi08g01358 | Lsi-Chr8:21900887 | 1.03E-33 | transposed | |
Lsi04g01710 | Lsi-Chr4:24446110 | Lsi08g01358 | Lsi-Chr8:21900887 | 3.45E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25811 | PF00847 | AP2 | 2.90E-14 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g01358 | - | - | csv:101213875 | 255.373 |