Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01359 ATGGGCAACTTCAGCTTTAATTTTCTGACTGTCTTTCTCCTTCTTCTTCGCCCTCTTTCTGCTACTACGAATGTTTCGGAGCTCTTCGAAATCTGGTGCACAGAGCACGGGAAATCGTATTCCTCGACCGAAGAAAAGCTTTACAGGCTAAGTGTGTTTGCCGATAACTACGAATTTGTTACTCATCACAACAATTTGGGCCATTCTTCTTATACCCTTTCTCTCAATTCTTATGCTGATCTTACCCACCATGAGTTTAAGGTCTCTCGCTTGGGTTTTTCCCCTGCTTTGCGGAACTTGCGGCGGGTTCCGCCGCAAGAACCCTCTCTTCCACGGGATGTTCCTGATTCGTTAGATTGGAGGAAGAAAGGGGCGGTGACTGCTGTTAAGGATCAAGGAAGCTGTGATGATTTGAGTAGAGGGTTATGTGAATTCAAATTCTACGATGTTATGTTGTATCTTCTCCATTCTATTTTAAGAATCTGCACGATTGGAAACTTTAAATTGATATTTGAGCTAACATATAAAGAAGAGTGTTATATGTTAGTCTATTGTTTAATTTTGGATCTAACGATGATTTTATCATATAATTTGATGGTGATTACCAAGGTAGCCAAGTTGATTCCAAAGATCAGTCTTCATTTTCATCTCTTCACGATAAGCGTCAAGTTATTTGGAAGCTTTGCTCATCATCATCAGATTGGGAAAAAAACTGATAGCTCTCATTTTCACTTTTCAGGTGCTTGTTGGTCTTTCTCAGCTACAGGAGCCATTGAAGGGATCAACCAGATTATGACAGGGTCTCTTATTAGTCTCTCTGAACAGGAATTAATTGATTGTGACAGATCTTACAATTCTGGCTGTGAAGGAGGATTGATGGATTATGCATACCAATTTGTGATAAAAAACCATGGGATTGACACTGAGAATGACTATCCTTTTCAGGGTAGTGATGGATCGTGCCGTAAGGACAAGAATACTCTGTTGGGAACCTTAGGGATAGGAAAAGATTGCTTGCTGACTTGCATTTTATGTCTATTGAACTTGCAGCTGAAGAGGAATGCCGTCACCATTGATGGCTATACTGATGTTCCTCCAAGTGATGAGGGAAAATTACTGCAAGCAGTAGCAGCTCAACCTGTGAGTGTTGGTATATGTGGCAGTGAAAGAGCCTTTCAATTATACTCAAAGGGAATTTTCTCCGGTCCGTGTTCAACTTCTTTGGATCATGCTGTGTTGATTGTAGGATATGGCTCAGAAAATGGAGTTGATTATTGGATTGTGAAGAACTCATGGGGTAAAAGTTGGGGAATGGATGGTTATATGCACATGCAGCGCAACGGCGGCAGTTCTGAAGGCGTTTGTGGAATCAACATGCTTGCTTCATATCCAACTAAAACAAGTCCTAACCCTCCTCCCTCCCCTCCTCCAGGTCCAACAAAATGTAGTATTCTTACTAGCTGTGCTGCTGGGGAAACCTGTTGTTGCGCAAAGAAATTCCTTGGCCTTTGTTTATCTTGGAAATGCTGTGGATTGAGCTCTGCCGTATGTTGCAAGGACGGTCGTCATTGTTGCCCCTTTGATTATCCCATTTGTGATACTGACAGGAACCTATGCCTCAAGCGAACGAAGAATGGTACAAGAATAGAAGCACTTGAGAATGGGAGTTCTTCCGGAACATCTGAGGAGGTTCCTTATGTCATTAGCTTTCTGCTGTGGTCCAAGAACTTCCATGGATTAGCTTTGGAGGCTTCTTACCTCGGTCGAGGCCAGAGTTTTATCGGGTTTTTGGCTCATCATTTTCTTCAGTACAACCATTTTAAT 1824 42.11 MGNFSFNFLTVFLLLLRPLSATTNVSELFEIWCTEHGKSYSSTEEKLYRLSVFADNYEFVTHHNNLGHSSYTLSLNSYADLTHHEFKVSRLGFSPALRNLRRVPPQEPSLPRDVPDSLDWRKKGAVTAVKDQGSCDDLSRGLCEFKFYDVMLYLLHSILRICTIGNFKLIFELTYKEECYMLVYCLILDLTMILSYNLMVITKVAKLIPKISLHFHLFTISVKLFGSFAHHHQIGKKTDSSHFHFSGACWSFSATGAIEGINQIMTGSLISLSEQELIDCDRSYNSGCEGGLMDYAYQFVIKNHGIDTENDYPFQGSDGSCRKDKNTLLGTLGIGKDCLLTCILCLLNLQLKRNAVTIDGYTDVPPSDEGKLLQAVAAQPVSVGICGSERAFQLYSKGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKSWGMDGYMHMQRNGGSSEGVCGINMLASYPTKTSPNPPPSPPPGPTKCSILTSCAAGETCCCAKKFLGLCLSWKCCGLSSAVCCKDGRHCCPFDYPICDTDRNLCLKRTKNGTRIEALENGSSSGTSEEVPYVISFLLWSKNFHGLALEASYLGRGQSFIGFLAHHFLQYNHFN 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21908730 21913753 + Lsi08G013590.1 Lsi08g01359 669285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01359 608 PANTHER OS05G0508300 PROTEIN 15 137 - -
Lsi08g01359 608 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 408 418 IPR025660 -
Lsi08g01359 608 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Lsi08g01359 608 Pfam Papain family cysteine protease 247 464 IPR000668 GO:0006508|GO:0008234
Lsi08g01359 608 Gene3D Granulin 480 549 IPR037277 -
Lsi08g01359 608 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 15 137 - -
Lsi08g01359 608 SMART Inhibitor_I29_2 29 86 IPR013201 -
Lsi08g01359 608 SMART pept_c1 114 465 IPR000668 GO:0006508|GO:0008234
Lsi08g01359 608 CDD Peptidase_C1A 247 464 IPR039417 -
Lsi08g01359 608 SUPERFAMILY Cysteine proteinases 24 136 IPR038765 -
Lsi08g01359 608 SUPERFAMILY Granulin repeat 479 512 - -
Lsi08g01359 608 SMART GRAN_2 482 539 IPR000118 -
Lsi08g01359 608 Gene3D Cysteine proteinases 17 467 - -
Lsi08g01359 608 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 425 444 IPR025661 -
Lsi08g01359 608 PRINTS Papain cysteine protease (C1) family signature 410 420 IPR000668 GO:0006508|GO:0008234
Lsi08g01359 608 PRINTS Papain cysteine protease (C1) family signature 425 431 IPR000668 GO:0006508|GO:0008234
Lsi08g01359 608 PRINTS Papain cysteine protease (C1) family signature 243 258 IPR000668 GO:0006508|GO:0008234
Lsi08g01359 608 SUPERFAMILY Cysteine proteinases 245 468 IPR038765 -
Lsi08g01359 608 Pfam Granulin 493 540 IPR000118 -
Lsi08g01359 608 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 244 500 - -
Lsi08g01359 608 PANTHER OS05G0508300 PROTEIN 244 500 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01359 - - - csv:101211052 541.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01359 Lsi-Chr8:21908730 Lsi11g01302 Lsi-Chr11:21647277 2.84E-23 dispersed
Lsi08g01359 Lsi-Chr8:21908730 Lsi03g00521 Lsi-Chr3:6054071 7.05E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30