Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01362 ATGGGTGAAGAAGGTCAAGTTATTGCATGCCATAAGCAACCTGAATGGGAGGCTCTATTAGCCAAAGCCAAGGAATCTGGAAAACTGGTTGTGGTGGATTTTACTGCTTCCTGGTGCGGTCCATGCCGTACAATCGCTCCATATTTCTCAGAATTGGCTAAGAATCATGCCGGTGTCATTTTCCTGAAAGTGGACGTCGATGAACTGAATGCTGTTGCTAGCCAGTGGGATATTAATGCAATGCCGACGTTTGTTTTTATGAAAGGAGGGGAAACAGTTCACAGGATTGTAGGTGCTGATAAAGGGGCGCTGTTGACGAAAATAGAAGAGCTTAAAACTCCAACAGTTGCTACTACTTCTACTGCTTAG 369 44.72 MGEEGQVIACHKQPEWEALLAKAKESGKLVVVDFTASWCGPCRTIAPYFSELAKNHAGVIFLKVDVDELNAVASQWDINAMPTFVFMKGGETVHRIVGADKGALLTKIEELKTPTVATTSTA 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21923162 21924072 + Lsi08G013620.1 Lsi08g01362 669288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01362 122 PANTHER THIOREDOXIN 1 112 - -
Lsi08g01362 122 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Lsi08g01362 122 Pfam Thioredoxin 10 108 IPR013766 -
Lsi08g01362 122 PRINTS Thioredoxin family signature 30 38 - -
Lsi08g01362 122 PRINTS Thioredoxin family signature 77 88 - -
Lsi08g01362 122 PRINTS Thioredoxin family signature 38 47 - -
Lsi08g01362 122 Gene3D Glutaredoxin 1 117 - -
Lsi08g01362 122 SUPERFAMILY Thioredoxin-like 6 111 IPR036249 -
Lsi08g01362 122 CDD TRX_family 20 109 - -
Lsi08g01362 122 PANTHER THIOREDOXIN 1 112 - -
Lsi08g01362 122 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01362 K03671 trxA; thioredoxin 1 - csv:101212030 217.238
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01625 Lsi-Chr1:14624256 Lsi08g01362 Lsi-Chr8:21923162 2.88E-33 dispersed
Lsi03g00249 Lsi-Chr3:3128163 Lsi08g01362 Lsi-Chr8:21923162 1.72E-30 dispersed
Lsi04g01246 Lsi-Chr4:19409953 Lsi08g01362 Lsi-Chr8:21923162 1.06E-27 dispersed
Lsi04g01706 Lsi-Chr4:24424625 Lsi08g01362 Lsi-Chr8:21923162 3.85E-39 dispersed
Lsi08g00514 Lsi-Chr8:13066182 Lsi08g01362 Lsi-Chr8:21923162 1.83E-16 dispersed
Lsi08g01294 Lsi-Chr8:21324216 Lsi08g01362 Lsi-Chr8:21923162 1.78E-10 dispersed
Lsi08g01360 Lsi-Chr8:21915012 Lsi08g01362 Lsi-Chr8:21923162 1.27E-47 dispersed
Lsi08g01471 Lsi-Chr8:22844052 Lsi08g01362 Lsi-Chr8:21923162 1.77E-13 dispersed
Lsi08g01361 Lsi-Chr8:21919285 Lsi08g01362 Lsi-Chr8:21923162 2.91E-50 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56