Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01363 ATGGAGAAACTGGCAATTCCTTGCCAAACAAACCCTCCAATTTCTGTCCCTGCTTCAATTATCAAAGCCAAACCCCTTAAATTCTCCTCAAAACCAATTAAAACTTCTATATTTTTCACCCAGAAATTTACTACAAAGTTCAATGACGACAATTTGAGTTACCTTTGCAGCAATGGGCTCCTCCGGGAAGCCATAACATCCATCGATTCAATGTCTAAACGTGGGTCTAAGCTAAGCACCAACACGTATATCAATTTGCTTCAGACTTGCATAGATGCGGATTCTATTGAACTGGGTCGTGAGCTTCATGATCGTATGAGTTCAGTCGATCAGGTCAACCCATTTGTTGAGACAAAGCTAGTAAGCATGTATGCGAAATGTGGGTTTCTAAAAGATGCACGTAAGGTGTTTGATGGAATGCAGGAGAGAAATTTGTACACTTGGTCGGCAATGATAGGCGCATATTCAAGAGAGCAGAGGTGGAAAGAAGTAGTTGAACTTTTCTTTTTGATGATGGGAGATGGGGTACTGCCTGATGCTTTTCTTTTCCCAAAAATACTGCAGGCTTGTGGGAATTGCGAGGATCTTGAAACTGTAAAGTTAATACATTCTGTGGTTATTCGATGTGGGTTGAGTTGTTATATTCGAGTGAGCAATTCCATTTTGACGGCATTTGTCAAATGTGGGAAATTGTGTCTAGCTAGAAAGTTCTTTGGGAACATGGACGAAAGAGATGGGGTTTCTTGGAATGCTATAATAGCTGGTTATTGCCAGAAGGGAAATGGTGATGAAGCTAGGAGATTGCTTGATGCGATGAGCGATCAAGGATTCAAACCGGGTTTGGTTACTTATAACATAATGATTGCTAGTTATAGCCAGTTGGGGAATTTTAATCTTGTCATAGAATTGAAGAAGAAGATGGAGAGTATGGGGATAGCTCCTGATGTTTATACTTGGACCTCAATGATTTCGGGTTTTGCTCAAAGCAGCAGGATTAGTCAGGCATTGGATTTCTTCAAGGAGATGATTCTAGCTTGGGTTGAACCAAATGCTATAACTATTGCAAGTGCGACCTCAGCCTGTGCTTCCTTAAAATCACTGCAAAAAGGGCTGGAAATACATTGTTTTGCAATTAAAATGGGAATTGCGCATGAAATATTGGTTGGGAATTCACTTATTGATATGTATTCTAAATGTGGAAAATTGGAAGCTGCTCGCCATGTCTTTGACACGATTTTAGAAAAAGACATTTATACATGGAACTCGATGATTGGAGGATACTGTCAGGCTGGATATTGTGGAAAAGCATATGAACTTTTTATGAGATTAAGGGAATCAAATGTAATGCCTAATGTTGTTACATGGAATGTGATGATATCAGGATGTATACAGAATGGAGATGAGGATCAAGCTGTGAACCTCTTTCAAATTATGGAAAAAGATGGGGAGGTTAAGCGGAATACAGCATCCTGGAATTCTCTGATTGCTGGGTACCACCAGCTTGGTGAAAAGAACAAAGCTCTAGCAATATTTCGACAAATGCAGTCTCTTAATTTTAATCCTAATTCAGTGACTATCTTGAGCATTTTACCAGCTTGTGCAAATGTAATGGCAGAGAAAAAAGTAAAGGAAATCCATGGTTGTGTGTTGCGCAGAAACCTGGAATCTGAGCTTCCTATTGCAAACTCACTTATAGACACTTATGCCAAGTCAGGGAACATTCAATATTCAAGAACCATCTTTGATGGCATGTCATCCAAAGATATTATCACATGGAATTCAATTATTGCAGGATATATTTTACATGGTTGTTCAGATGCTGCATTTCATTTATTTGGTCAGATGAAAAAGTTAGGAATTAGGCCAAACCGAGGTACTCTGGCTAGTCTTATTCATGCCTATGGCATTGCCGGAATGGTAGACAAGGGAAGACATGTTTTTTCTAGCATCACTGAAGAACATCAAATTCTACCAACTTTAGATCATTATTTGGCTATGGTAGATCTGTATGGACGTTCTGGGAGGCTTACAGATGCAATAGAGTTCATCGAAGATATGCCTATAGAACCCGATGGCTCTATCTGGACCAGCTTACTTACTGCCTGTAGGTTTCACGGGAACTTACACTTGGCGGTACAAGCAGCCAAGCGCCTACACGAATTGGAGCCTGATAATCATGTGATTTACCGTTTATTAATACAGGCATATGCTTTATATGGGAACTTTGAACAAGCTCTAAAAGTGAGAAAGCTTGGAAAAGAGAGTGCGATGAAGAAATGTACAGCACAGTGCTGGGTTGAAGTCAGGAACAAAGTCCATTTATTTGTCACTAGCGACCAGTCTAAACTTGACAGTTTTGATGATTCTCGAAAAATCAAGCCAGTCTTGGCTGGTCCTTTTGGAGGACCAGGTGGAAATAATTGGGACGATGGAGTTTATTCGACTATCAGGCAGTTGGTAATTTGCCATGGAGCTGGTATCGACTCCATTAAGATTCAATATGATGTGAAGGGAAGTTCAATTTGGTCAGATAGACATGGAGGAAATGGTGGCACTAAAACAGACACGGTAGCTCCATACTTTGTTGGATCATCAATTGTTTGCTCAGTGAAGCTTGATTTTCCGGATGAGTACTTGACTATGATCCGTGGACACTATGGTAGCTTTGTGTCATTTGACAAAGTTTTTGTTCGATCCCTGACTTTTATGAGCAACAAAAAGAAGTACGGACCTTACGGGGTCGAACAAGGAACAGTTTTCTCTTTCCCAACGACTGAGGGCAAGATTGTAGGGTTCCATGGCAGGAGTGGATTGTACCTGGATGCCATTGGAGTTTACCTAAAGCCTATGGCAATACAAACACCATCTAAAGCAATGATTCAGTCACAGAATTATGTTGCGAGTAAGACTGAAAGTGAAGGCTATTCGATTATACAAGGAAGTGTTGGCCAAAATTATGATATTGTTCTTGCTTTGAGGCAGAAGGATGAATTCAAAAAGCCTCTTCCAACTACTGTCTCAAAACAAGTATCTAGTTCCTCAAGCTCAGAATCAAGTGATGATGAATCCACAGTCAAGAGGCCTGTTAAGAAGGGACTGTCTAAAGTCGAAAATGTGGTACCATGTGGACCATGGGGCGGCTCGGGCGGAACTCCATTTGATGATGGATATTACACTGGTATTAGACAAATTAATGTGTCACGCAATGTTGGAATTGTATATATAAGAGTTCTGTATGCTTGCGATGAGGAATCTATATGGGGAGTACGAGCAGGTGGAACGGGAGGATTCAAACATGACAAGGTTATCTTGGACTATCCATATGAAATCTTGACTCATGTAACTGGACATTATGGGCCTGTCATGTACATGGGACCTAATGTTATCAAGTCACTCACATTCCATACTACAAAAACGAAGTACGGACCATTCGGAGAGGCACAAGGAACCCCCTTTAGTACCAACGTCAAGGAGGGGAAGATTGTTGGATTTCATGGGAGGAAAGGTTTGTTCCTAGATGCCCTTGGTGTGCACTTAGTTGAAGGAAAGGTGACCCCGGTGTCTCGTCCTCCCTCCAGTGATATTGTTCCTGCTGCACCACCACTTCTCGAAAATGAGAACGCCCCTTGGACTATGAAGCTGGCACCTTCAAAAGGAGGAGCACTTGAAGAGATTGCTCGTGGTGTAGTAAAAGAACCGGCACCCTGTGGACCTGGACCATGGGGCGGAGATGGTGGGAAACCATGGGATGATGGAGTATTTTCTGGCATTAAACAGATATACTTGACACGGTCTCTTGAAGCTTTTTGTTCAATTCAAATTGAATATGATCGAAACAAACAATCAGTTTGGTCAGTTAAGCATGGAGGAAACAGTGGAACAACCATACATCGGGTAAAATTGAATTATCCACATGAAGTGTTAACCTGTATATCAGGATATTACGGTTACATCGGTAAAGATGAGAGACAACAAGCTATAAAGTCACTTACTTTTCACACAAGCAGGGGGAAGTTCGGTCCATTTGGGGAGGAGGTAGGGTCGTTTTTCACATCCACGACGACGGAAGGCAAAGTGGTTGGCTTCCATGGGAGGAGCAGCTTGTATTTGGACGCCATTGGAGTTCACATGCAACACTGGCTAGGAAGCCAAAGGGCATCCAAGTCGTCTTTGTTCAAACTGTTCTGA 4188 41.6 MEKLAIPCQTNPPISVPASIIKAKPLKFSSKPIKTSIFFTQKFTTKFNDDNLSYLCSNGLLREAITSIDSMSKRGSKLSTNTYINLLQTCIDADSIELGRELHDRMSSVDQVNPFVETKLVSMYAKCGFLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSVVIRCGLSCYIRVSNSILTAFVKCGKLCLARKFFGNMDERDGVSWNAIIAGYCQKGNGDEARRLLDAMSDQGFKPGLVTYNIMIASYSQLGNFNLVIELKKKMESMGIAPDVYTWTSMISGFAQSSRISQALDFFKEMILAWVEPNAITIASATSACASLKSLQKGLEIHCFAIKMGIAHEILVGNSLIDMYSKCGKLEAARHVFDTILEKDIYTWNSMIGGYCQAGYCGKAYELFMRLRESNVMPNVVTWNVMISGCIQNGDEDQAVNLFQIMEKDGEVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFNPNSVTILSILPACANVMAEKKVKEIHGCVLRRNLESELPIANSLIDTYAKSGNIQYSRTIFDGMSSKDIITWNSIIAGYILHGCSDAAFHLFGQMKKLGIRPNRGTLASLIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLTDAIEFIEDMPIEPDGSIWTSLLTACRFHGNLHLAVQAAKRLHELEPDNHVIYRLLIQAYALYGNFEQALKVRKLGKESAMKKCTAQCWVEVRNKVHLFVTSDQSKLDSFDDSRKIKPVLAGPFGGPGGNNWDDGVYSTIRQLVICHGAGIDSIKIQYDVKGSSIWSDRHGGNGGTKTDTVAPYFVGSSIVCSVKLDFPDEYLTMIRGHYGSFVSFDKVFVRSLTFMSNKKKYGPYGVEQGTVFSFPTTEGKIVGFHGRSGLYLDAIGVYLKPMAIQTPSKAMIQSQNYVASKTESEGYSIIQGSVGQNYDIVLALRQKDEFKKPLPTTVSKQVSSSSSSESSDDESTVKRPVKKGLSKVENVVPCGPWGGSGGTPFDDGYYTGIRQINVSRNVGIVYIRVLYACDEESIWGVRAGGTGGFKHDKVILDYPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKTKYGPFGEAQGTPFSTNVKEGKIVGFHGRKGLFLDALGVHLVEGKVTPVSRPPSSDIVPAAPPLLENENAPWTMKLAPSKGGALEEIARGVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTRSLEAFCSIQIEYDRNKQSVWSVKHGGNSGTTIHRVKLNYPHEVLTCISGYYGYIGKDERQQAIKSLTFHTSRGKFGPFGEEVGSFFTSTTTEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRASKSSLFKLF 1395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21925608 21932482 + Lsi08G013630.1 Lsi08g01363 669289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01363 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Lsi08g01363 1395 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 383 451 - -
Lsi08g01363 1395 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 381 - -
Lsi08g01363 1395 TIGRFAM PPR: pentatricopeptide repeat domain 453 483 IPR002885 -
Lsi08g01363 1395 TIGRFAM PPR: pentatricopeptide repeat domain 490 522 IPR002885 -
Lsi08g01363 1395 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Lsi08g01363 1395 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Lsi08g01363 1395 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Lsi08g01363 1395 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Lsi08g01363 1395 TIGRFAM PPR: pentatricopeptide repeat domain 418 452 IPR002885 -
Lsi08g01363 1395 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Lsi08g01363 1395 Pfam PPR repeat 120 144 IPR002885 -
Lsi08g01363 1395 Pfam PPR repeat 146 176 IPR002885 -
Lsi08g01363 1395 Pfam PPR repeat 663 686 IPR002885 -
Lsi08g01363 1395 Pfam E motif 705 767 IPR046848 -
Lsi08g01363 1395 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 522 793 - -
Lsi08g01363 1395 SUPERFAMILY Mannose-binding lectins 1235 1377 IPR036404 -
Lsi08g01363 1395 CDD Jacalin 1249 1378 IPR033734 GO:0030246
Lsi08g01363 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Lsi08g01363 1395 Gene3D Tetratricopeptide repeat domain 364 466 IPR011990 GO:0005515
Lsi08g01363 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Lsi08g01363 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Lsi08g01363 1395 SUPERFAMILY Mannose-binding lectins 1041 1179 IPR036404 -
Lsi08g01363 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Lsi08g01363 1395 SUPERFAMILY Mannose-binding lectins 794 949 IPR036404 -
Lsi08g01363 1395 MobiDBLite consensus disorder prediction 1003 1030 - -
Lsi08g01363 1395 ProSiteProfiles Jacalin-type lectin domain profile. 1235 1379 IPR001229 -
Lsi08g01363 1395 CDD Jacalin 808 948 IPR033734 GO:0030246
Lsi08g01363 1395 MobiDBLite consensus disorder prediction 1004 1019 - -
Lsi08g01363 1395 SUPERFAMILY TPR-like 464 748 IPR011990 GO:0005515
Lsi08g01363 1395 Pfam PPR repeat family 587 634 IPR002885 -
Lsi08g01363 1395 Pfam PPR repeat family 415 462 IPR002885 -
Lsi08g01363 1395 Pfam PPR repeat family 246 290 IPR002885 -
Lsi08g01363 1395 Pfam PPR repeat family 487 534 IPR002885 -
Lsi08g01363 1395 Pfam PPR repeat family 314 354 IPR002885 -
Lsi08g01363 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Lsi08g01363 1395 Gene3D Tetratricopeptide repeat domain 476 550 IPR011990 GO:0005515
Lsi08g01363 1395 Gene3D - 1230 1378 IPR036404 -
Lsi08g01363 1395 Gene3D - 783 947 IPR036404 -
Lsi08g01363 1395 Gene3D - 1029 1180 IPR036404 -
Lsi08g01363 1395 PANTHER BNAA06G13890D PROTEIN 50 381 - -
Lsi08g01363 1395 Pfam Jacalin-like lectin domain 1246 1378 IPR001229 -
Lsi08g01363 1395 Pfam Jacalin-like lectin domain 805 949 IPR001229 -
Lsi08g01363 1395 Pfam Jacalin-like lectin domain 1050 1179 IPR001229 -
Lsi08g01363 1395 Gene3D Tetratricopeptide repeat domain 559 782 IPR011990 GO:0005515
Lsi08g01363 1395 Gene3D Tetratricopeptide repeat domain 48 207 IPR011990 GO:0005515
Lsi08g01363 1395 Gene3D Tetratricopeptide repeat domain 208 363 IPR011990 GO:0005515
Lsi08g01363 1395 ProSiteProfiles Jacalin-type lectin domain profile. 794 949 IPR001229 -
Lsi08g01363 1395 ProSiteProfiles Jacalin-type lectin domain profile. 1039 1181 IPR001229 -
Lsi08g01363 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Lsi08g01363 1395 PANTHER BNAA06G13890D PROTEIN 383 451 - -
Lsi08g01363 1395 PANTHER BNAA06G13890D PROTEIN 522 793 - -
Lsi08g01363 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Lsi08g01363 1395 CDD Jacalin 1050 1179 IPR033734 GO:0030246
Lsi08g01363 1395 SMART Jacalin_2 1050 1181 IPR001229 -
Lsi08g01363 1395 SMART Jacalin_2 1246 1379 IPR001229 -
Lsi08g01363 1395 SMART Jacalin_2 805 949 IPR001229 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01363 - - - cqi:110724509 1519.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01683 Lsi-Chr4:24221460 Lsi08g01363 Lsi-Chr8:21925608 3.90E-11 dispersed
Lsi04g01684 Lsi-Chr4:24229068 Lsi08g01363 Lsi-Chr8:21925608 4.99E-16 dispersed
Lsi08g00939 Lsi-Chr8:17858456 Lsi08g01363 Lsi-Chr8:21925608 4.09E-13 dispersed
Lsi08g01363 Lsi-Chr8:21925608 Lsi01g01115 Lsi-Chr1:9215410 1.78E-08 dispersed
Lsi08g01363 Lsi-Chr8:21925608 Lsi05g01931 Lsi-Chr5:26484302 1.96E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53