Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01364 ATGCAACACTGCCACCGCCGCCGTCCGATTACCTTCGCCGCCGTGAAAAGTTTCATTAATAATTCAACAATGATGACCACTAAGCTTCTCTTGGCCTTTGCCTTCTGCCGTTTGATAGCCACCGTGGGACTCGACATGGGTCCGGCGGCGGAGCTTCCCCGTCTCGGTATCGACGGCCTTCTCACCGTCGACCCTTCCGATATCGAAACCGCTTCTATCGATTTCGGCCTCATGACTCGAAATCCGCCTCTCGCCGTCTTGCACCCAGCCTCCGCCGATGACGTCGCCAAAGTGATCCGGACGGCGGTTGCGGCGGCGGATACGGCGGAGTATGGTGGGTTTACGGTGTCGGCGAGAGGGCACGGGCATTCGATAAACGGGCAGGCGCAGACGGGGAATGGGGTGGTGATTGAGATGAGTGGCGGCGGAAGACGGCACCGGCGCGGCGGCGGGAGGGGTATTTCGCCGCCTCCGCCGCCGCATGTGGTGTCGGAGAAAGAGAGATTTGTAGACGTATGGGGCGGAGAGCTGTGGATTGATGTACTGAAATCGACGTTGGGATATGGGTTGGCGCCGAGATCGTGGACGGATTATTTGTATTTGACGGTCGGCGGAACGCTGTCGAACGGCGGAATCAGCGGCCAAGCTTTCAACCATGGCCCTCAGATCAGCAATGTCCATGAACTTGACGTCGTCACAGGAAATGGAGAGACAGTGAAATGTTCAAATGAAGAAAACTCAGATCTATTCCACGCAGTTCTTGGTGGATTAGGACAATTTGGGATCATCACACGAGCAAGAATTCTTCTCGAACCAGCTCCTCAAAGGGTTCGATGGATTAGAGTATTGTACTCAAATTTCGAAGCATTTACAAAGGATCAAGAATGGCTAATTTCTTTACATTCAAAATCAAATAATGAGAAATTCGATTACGTGGAAGGATTTGTAATCGTGGACGAAGGCTTAATCAACAACTGGAGATCCTCCTTCTTCTCACCGGCTAATCCGGTCAAAATAACCTCCTTTAATAATAATCACTCTGATGGAGGAGTTTTATACTGCTTGGAGATCACCAAAAACTACCATGAATCCGCATCTCACACCGTTCATCAGGAAGTAGAGGCGTTGCTGAAGGAATTGAATTACATACCCGAGTCGGTTTTCACAACGGACCTAGGTTACGTGGACTTTCTGGACCGGGTTCACAAGGCCGAATTAAAGCTCCGGTCCAAGGGCCTGTGGGATGTCCCACATCCATGGCTAAACCTCTTCGTCCCAAAGTCAAGAATCGCCGATTTTGACCGAGGAGTTTTCAAGGGCATTTTGGGAAATAATACCAGTGGGCCCATCCTCATCTACCCCATGAACAAACACAAGTGGGACCCGAGGACCTCCGCCGTGACCCCGGAGGATGATGTGTTCTACCTAGTGGCATTGCTACGGTCAGCGTTGGACAATGGGGAGCCGACGCAGTCCTTGGAGTATTTGAGTCATCAGAATCATCAAATCTTGGCATTCTGTTCCGAAAACCGGATTGAAGTGAAACAATACTTGCCTCACTATACGACGGAGGAGGAGTGGGCCGAGCATTTTGGAGATAAGTGGCCGGAGTTTCAAGCGAGGAAGATGAAGTTCGATCCTCGCCACATTCTCGCCACCGGGCAGAGGATATTCCCACCCTTCAAGCCGGTAAACACAGCTGTATCCCGCTCAGAATTGTTTTGCCGAGGACCAGAAAAGGACGGTGGATTTTCAGCAACATGGATGGGGTCCTCCATGATCAATGCCTGCACAAATAATGTACTGCTGAGGCTAATTTCCGACCGTCCAATTGCTTTGCCTCTGGCTTTTGATCATCAGCAGTTTGATGATGGGTTCAGTTCTAACTTCCAAGTCTAA 1899 50.97 MQHCHRRRPITFAAVKSFINNSTMMTTKLLLAFAFCRLIATVGLDMGPAAELPRLGIDGLLTVDPSDIETASIDFGLMTRNPPLAVLHPASADDVAKVIRTAVAAADTAEYGGFTVSARGHGHSINGQAQTGNGVVIEMSGGGRRHRRGGGRGISPPPPPHVVSEKERFVDVWGGELWIDVLKSTLGYGLAPRSWTDYLYLTVGGTLSNGGISGQAFNHGPQISNVHELDVVTGNGETVKCSNEENSDLFHAVLGGLGQFGIITRARILLEPAPQRVRWIRVLYSNFEAFTKDQEWLISLHSKSNNEKFDYVEGFVIVDEGLINNWRSSFFSPANPVKITSFNNNHSDGGVLYCLEITKNYHESASHTVHQEVEALLKELNYIPESVFTTDLGYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIADFDRGVFKGILGNNTSGPILIYPMNKHKWDPRTSAVTPEDDVFYLVALLRSALDNGEPTQSLEYLSHQNHQILAFCSENRIEVKQYLPHYTTEEEWAEHFGDKWPEFQARKMKFDPRHILATGQRIFPPFKPVNTAVSRSELFCRGPEKDGGFSATWMGSSMINACTNNVLLRLISDRPIALPLAFDHQQFDDGFSSNFQV 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21946512 21953448 + Lsi08G013640.1 Lsi08g01364 669290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01364 632 Pfam FAD binding domain 83 242 IPR006094 GO:0050660
Lsi08g01364 632 Gene3D - 276 517 IPR016170 -
Lsi08g01364 632 PANTHER GULONOLACTONE OXIDASE 27 560 - -
Lsi08g01364 632 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 274 558 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lsi08g01364 632 Gene3D - 139 275 IPR016169 -
Lsi08g01364 632 SUPERFAMILY FAD-linked oxidases, C-terminal domain 274 558 IPR016164 GO:0003824|GO:0050660
Lsi08g01364 632 SUPERFAMILY FAD-binding/transporter-associated domain-like 58 272 IPR036318 GO:0050660
Lsi08g01364 632 ProSiteProfiles PCMH-type FAD-binding domain profile. 79 273 IPR016166 GO:0071949
Lsi08g01364 632 PANTHER CYTOKININ OXIDASE 5-RELATED 27 560 - -
Lsi08g01364 632 MobiDBLite consensus disorder prediction 141 162 - -
Lsi08g01364 632 Gene3D - 64 558 IPR016167 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01364 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - csv:101212272 983.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00806 Lsi-Chr4:7657324 Lsi08g01364 Lsi-Chr8:21946512 0 dispersed
Lsi04g01389 Lsi-Chr4:21699031 Lsi08g01364 Lsi-Chr8:21946512 2.59E-140 dispersed
Lsi08g01364 Lsi-Chr8:21946512 Lsi11g00186 Lsi-Chr11:1925183 1.04E-133 dispersed
Lsi08g01364 Lsi-Chr8:21946512 Lsi06g00282 Lsi-Chr6:3219410 5.31E-163 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1010 . . . . . . . . Cmo05g00273 Cmo12g00392 . . . Car12g00418 . . Cpe07g00396 Bhi04g00207 . . . Hepe10g0607 . . Cla08g01458 Cam08g1944 Cec08g1518 Cco08g1657 Clacu08g1634 . Cre08g1420 . . Cone17ag1365 Cone20ag0116 . . . Cme03g01922 . . . . . . . . . . . Cma12g00441 Cma05g00269 Car05g00223 . Cpe11g00222 . . . . . . . . . . . . . . . Lsi08g01364 Csa02g02088 Chy03g01426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009284 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34