Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01369 ATGGAAGTTTCAGACAGTCGAGATCGGGACGTAAAAAACATCGTCGTTTTGGGGGTAATATCATGGACATTGGGTTTCATTTGCTTAAGAAAACTCCTTCCAAATCGATCTTTTGAGTTTTGCAATCGACTCATTTCCACACTCCATGCTTGTTTGGCTGTTACATTGGCTTCCATCTCTGTTCAAAATTGGCGTTGTCCCATTTGTCCTCTTGCTTCGAAATCCTCACCCTTTCAGATGCAAACATTGGCTGTGAGCTGTTCTTATTTGATATATGATTTGGTGTGTTGCCATTTTGACAAGAAAGTGAGTTTGGACAATACAATCCATCACTTGGTTAGCATTGTTGGAATTGCAGCAGGCTTTGCTTATCAAAAGATATTTATCTTGTTGACATACTACATTATCGATATAACTGACAATGCTAAAGCCATGGCTCTGGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATTGAAGAACAATTAA 534 39.33 MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLVSIVGIAAGFAYQKIFILLTYYIIDITDNAKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21978120 21980859 - Lsi08G013690.1 Lsi08g01369 669295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01369 177 PANTHER TRANSMEMBRANE PROTEIN 136 11 127 IPR042512 -
Lsi08g01369 177 ProSiteProfiles TLC domain profile. 35 177 IPR006634 GO:0016021
Lsi08g01369 177 SMART lag1_27 35 169 IPR006634 GO:0016021
Lsi08g01369 177 Pfam TLC domain 39 140 IPR006634 GO:0016021
Lsi08g01369 177 PANTHER - 142 172 - -
Lsi08g01369 177 PANTHER - 11 127 - -
Lsi08g01369 177 PANTHER TRANSMEMBRANE PROTEIN 136 142 172 IPR042512 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01369 - - - csv:101213712 247.669
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1000 . . . . . . . . Cmo05g00269 . . . . . . . . Bhi04g00203 . . . Hepe10g0610 . . Cla08g01461 Cam08g1947 Cec08g1522 Cco08g1660 Clacu08g1637 . Cre08g1423 . . Cone17ag1361 Cone20ag0120 . . . Cme03g01926 . Blo18g00800 . . Bpe02g01707 . . . . . . . Cma05g00266 Car05g00221 . Cpe11g00219 . . . . . . . . . . . . . . . Lsi08g01369 Csa02g02084 Chy03g01430 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012015 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30