Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01370 ATGGTTCAACATTGGGAAATGGATGCATTGTGTTGGAATCATCCAGCAATTTCTCTGAAAGTCAAAGTCAGCAAAAATTCTGAGAATCAATGTTTCCTTAGACCCAAATCGTCGTCGCATTTTCTCTGCCGAACGGCGATGAACAGTTCAAATCCAGAATCAAAACCGTCGCCACTGAAAATCCAGAATCGCATGTTCATTCTAGGGATGGGTTTCGTTGGACAGTTCTTTGCGCAAGAACTAAAAATTATAGGTGTGAAGTTAATGAAATGGGGGTTGATCATTAGGGCTGTTTCTGGGACTTGTAGAAACCTTGGGCAGAAGATGGAACTGGAGGGAAGAGGTTTTGATGTTTATGCTTTTGATGCAAGTGATCCAGAACTGGGCACTCTAAAATCAATGAAGTATCATACTCATCTTCTCATTTCTATTCCACCAGATGTGGATGTTGGTGATCCTCTGCTCCAGCATGAAGAACTTTTAAGGACTACTTTACAGGGTGGAGATCTTCGATGGCTTTGCTATTTGTCATCGACAAGTGTTTATGGAGATTATGGTGGTGCGTGGGTAGATGAAGATAACCCGGCAAACCCTTCAAGTCAGTCAGGCAAGTTGAGGATCGAAGCAGAGGAGAGATGGCTAAATTTGGGTAATGATCTTGGCCTCTCAACTCAAGTATTTCGGCTTGGAGGTATCTATGGTCCAGGTAGAAGGAATCACCCATCTTTCTGCATTCCATTCTCCTTTTTCATTCACTGCCTTCAACTTCAAATCTATACCATTCCTATTCTTGTGATTTCCATCAAGGTCCATGTCCGTGAACAAAATGTTGTTGTTCTTGTTATACAAGTGATTGTTTTTCCTCAAAGACATTGGTTTCATCACAGTGCTATTGATACAATAATCAAGCAGAGATCCTTATCCGAGCGTCAACAACGTAGAGCACGTAGACAATACACATCCCGAGTTCATGTTCAGGACATCTGCCAAGCTCTTAAAGCCTGTATTCAAAGGCCTTCTTCCAGGAGAGTTTACAACATAGTTGACGACAATCCAGCTCCAAGGGAAGAAGTTTTCTCGTACGCTCGAGATTTGGTCGAGAAAAAGTGGCCTGGGAAATTCAACGCACTGTCGAAGCAGGTGGAGGCAAGTGTTATTACCAATGGAAGTGGAAAGGGTGATAAAAGAGTGTGTAATGTACGTATGAAAAGGGAACTGGGAGTGAATTTTGTGTATCCCAGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCGTGGGTTCAAATCCCACTTCTGA 1317 43.13 MVQHWEMDALCWNHPAISLKVKVSKNSENQCFLRPKSSSHFLCRTAMNSSNPESKPSPLKIQNRMFILGMGFVGQFFAQELKIIGVKLMKWGLIIRAVSGTCRNLGQKMELEGRGFDVYAFDASDPELGTLKSMKYHTHLLISIPPDVDVGDPLLQHEELLRTTLQGGDLRWLCYLSSTSVYGDYGGAWVDEDNPANPSSQSGKLRIEAEERWLNLGNDLGLSTQVFRLGGIYGPGRRNHPSFCIPFSFFIHCLQLQIYTIPILVISIKVHVREQNVVVLVIQVIVFPQRHWFHHSAIDTIIKQRSLSERQQRRARRQYTSRVHVQDICQALKACIQRPSSRRVYNIVDDNPAPREEVFSYARDLVEKKWPGKFNALSKQVEASVITNGSGKGDKRVCNVRMKRELGVNFVYPRWPSGLRRQTQVLVFERGRGFKSHF 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21982441 21986126 + Lsi08G013700.1 Lsi08g01370 669296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01370 438 PANTHER OS01G0261500 PROTEIN 55 237 - -
Lsi08g01370 438 PANTHER OS01G0261500 PROTEIN 296 423 - -
Lsi08g01370 438 CDD SDR_a4 65 406 - -
Lsi08g01370 438 PANTHER EPIMERASE-RELATED 55 237 - -
Lsi08g01370 438 PANTHER EPIMERASE-RELATED 296 423 - -
Lsi08g01370 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 98 423 IPR036291 -
Lsi08g01370 438 Gene3D - 270 424 - -
Lsi08g01370 438 Gene3D - 60 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01370 - - - cmo:103487996 582.408
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g999 . . . . . . . . . . . . . . . . . Bhi04g00201 Tan02g2006 . . . . . . . . . . . . Cone4ag1934 Cone7ag1846 . . . . . Cme03g01927 . Blo18g00801 . Bda01g01511 Bpe02g01706 . Bma01g00748 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01370 Csa02g02083 Chy03g01431 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004726 1 3 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 5 6 1 40