Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01372 ATGGCGACCCCCGTTGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAACATTACTATTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCTATCAAGCCGATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACAAACGAGAAAGTTGCAATAAAGAGGATACACAATGCGTTTGAGAATCGTATTGATGCCCTCCGGACTTTGCGCGAATTGAAGCTCCTTAGGCATCTTCGCCACGAAAACGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTTTATTTGGTTTATGAACTGATGGATACTGATCTGCATCAGATTATTAAGTCTTCTCAAACTCTTACCAATGACCACTGCCAATATTTCCTCTTTCAGTTGCTCCGAGGCCTGAAGTATCTGCATTCTGCAAACATCCTACATCGGGACTTGAAGCCAGGGAACCTCCTTGTCAATGCAAATTGTGATCTTAAGATATGTGATTTTGGGTTAGCGCGTACGAGCAACGGGAAGAATCAATTTATGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGCGAGAACTATGGGACGTCCATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAGCTTCTCGGTAGGAAGCCTATCTTCCCAGGTACAGAATGTTTGAATCAACTCAAATTGATAATTAACATACTGGGTAGCCAGAGGGAGGAAGATCTTGAGTTCATAGACAATCAAAAGGCAAGGAGGTATATAAAATCTCTTCCATACTCTCCTGGGGCTCCTCTTTCCCGTCTTTATCCGAACGCTCATCCTCTTGCGATCGATCTGCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAGGCATTGCAACATCCTTACATGTCCCCACTTTATGATCCAAACAGCAATCCTCCAGCTCAGGTGCCGATCGATCTTGACATAGATGAGGAACTTGGGGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCCGAAGATCTGGAAGAACACGCAGAAATGACATGTTTCCATCCGGAACCTACTACAAGTAGTACCGCAGTGTATTCTTGA 1161 43.67 MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNQKARRYIKSLPYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEDLEEHAEMTCFHPEPTTSSTAVYS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22013371 22017288 - Lsi08G013720.1 Lsi08g01372 669298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01372 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi08g01372 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Lsi08g01372 386 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01372 386 CDD STKc_TEY_MAPK 26 361 - -
Lsi08g01372 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Lsi08g01372 386 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Lsi08g01372 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Lsi08g01372 386 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01372 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Lsi08g01372 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Lsi08g01372 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01372 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00244 Lsi-Chr7:2663814 Lsi08g01372 Lsi-Chr8:22013371 0 dispersed
Lsi08g01372 Lsi-Chr8:22013371 Lsi09g01365 Lsi-Chr9:21696552 1.33E-113 dispersed
Lsi08g01372 Lsi-Chr8:22013371 Lsi09g01590 Lsi-Chr9:24025453 9.85E-154 transposed
Lsi08g01372 Lsi-Chr8:22013371 Lsi09g00226 Lsi-Chr9:2368024 1.60E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83858 PF00069 Pkinase 6.60E-72 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01372 K20535 - csv:101213478 765.377