Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g01372 | ATGGCGACCCCCGTTGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAACATTACTATTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCTATCAAGCCGATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACAAACGAGAAAGTTGCAATAAAGAGGATACACAATGCGTTTGAGAATCGTATTGATGCCCTCCGGACTTTGCGCGAATTGAAGCTCCTTAGGCATCTTCGCCACGAAAACGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTTTATTTGGTTTATGAACTGATGGATACTGATCTGCATCAGATTATTAAGTCTTCTCAAACTCTTACCAATGACCACTGCCAATATTTCCTCTTTCAGTTGCTCCGAGGCCTGAAGTATCTGCATTCTGCAAACATCCTACATCGGGACTTGAAGCCAGGGAACCTCCTTGTCAATGCAAATTGTGATCTTAAGATATGTGATTTTGGGTTAGCGCGTACGAGCAACGGGAAGAATCAATTTATGACAGAGTATGTTGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGCGAGAACTATGGGACGTCCATTGATGTGTGGTCTGTAGGATGCATCTTTGCCGAGCTTCTCGGTAGGAAGCCTATCTTCCCAGGTACAGAATGTTTGAATCAACTCAAATTGATAATTAACATACTGGGTAGCCAGAGGGAGGAAGATCTTGAGTTCATAGACAATCAAAAGGCAAGGAGGTATATAAAATCTCTTCCATACTCTCCTGGGGCTCCTCTTTCCCGTCTTTATCCGAACGCTCATCCTCTTGCGATCGATCTGCTACAAAAGATGCTCGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAGGCATTGCAACATCCTTACATGTCCCCACTTTATGATCCAAACAGCAATCCTCCAGCTCAGGTGCCGATCGATCTTGACATAGATGAGGAACTTGGGGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCACCCCGAAGATCTGGAAGAACACGCAGAAATGACATGTTTCCATCCGGAACCTACTACAAGTAGTACCGCAGTGTATTCTTGA | 1161 | 43.67 | MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNQKARRYIKSLPYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEDLEEHAEMTCFHPEPTTSSTAVYS | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22013371 | 22017288 | - | Lsi08G013720.1 | Lsi08g01372 | 669298 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g01372 | 386 | ProSitePatterns | MAP kinase signature. | 67 | 170 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Lsi08g01372 | 386 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 154 | 166 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi08g01372 | 386 | SMART | serkin_6 | 32 | 319 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g01372 | 386 | CDD | STKc_TEY_MAPK | 26 | 361 | - | - | |
Lsi08g01372 | 386 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 12 | 366 | - | - | |
Lsi08g01372 | 386 | SUPERFAMILY | Protein kinase-like (PK-like) | 24 | 326 | IPR011009 | - | |
Lsi08g01372 | 386 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 345 | - | - | |
Lsi08g01372 | 386 | Pfam | Protein kinase domain | 33 | 319 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g01372 | 386 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 12 | 366 | - | - | |
Lsi08g01372 | 386 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 355 | - | - | |
Lsi08g01372 | 386 | ProSiteProfiles | Protein kinase domain profile. | 32 | 319 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g01372 | 386 | ProSitePatterns | Protein kinases ATP-binding region signature. | 38 | 61 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00244 | Lsi-Chr7:2663814 | Lsi08g01372 | Lsi-Chr8:22013371 | 0 | dispersed | |
Lsi08g01372 | Lsi-Chr8:22013371 | Lsi09g01365 | Lsi-Chr9:21696552 | 1.33E-113 | dispersed | |
Lsi08g01372 | Lsi-Chr8:22013371 | Lsi09g01590 | Lsi-Chr9:24025453 | 9.85E-154 | transposed | |
Lsi08g01372 | Lsi-Chr8:22013371 | Lsi09g00226 | Lsi-Chr9:2368024 | 1.60E-153 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83858 | PF00069 | Pkinase | 6.60E-72 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g01372 | K20535 | - | csv:101213478 | 765.377 |