Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01373 ATGATGCTAAAATCGCCGGAGCTCCCGGATTGCCGGTACATGAGCCCGCCGGTGATAGTCCGGCCGGCGAATCCAACCCCAAAACACTCGTTATATCTCTCCAATTTGGACGATCAGAGTTTTCTGAGATTCTCCATTAAATACGTGTTCTTATTCGAGAAGGGCGTGAGCTTGTGCAACCTCAAGCGCTCTCTGGCCATTGTTCTTGAACATTACTACCCATTTGCCGGACGACTGAGGGTCTGCGGCGGCGGAGGGTCGTCGTCGGAGAATGATCGGAAGCTTGAAGTGGAGTGTAATGGGGAAGGGGCGGTTTTTGCTGAGGGTTTTATGGATTTGACGGCGGAGGAATTTCTTCTTATGGCGGATACGCCTAATCGTTCTTGGAGAAAACTTCTTTATCGCTTTGAAGCTCTTGGTTTCTTGGATATTCCTCCTCTTGTTCTTCAGGTGACAAATTTGCGTTGCGGAGGGATGATTCTATGTACCGGAATAAACCACTGCCTGTCGGACGGCATTGGGACTTCACAATTTTTGCATGCCTGGGCCCACCTCACCACCAAACCCAATCTCCCTCTTCCAGTCAAACCATTCCATTTCCGCCACGTGTTTAAACCCCGCAACCCCCTCCACGTCACCTTTCCCCACCCTCAATATTCCAAAACTACCCCTTCCAACAACCATCTCCTCCTCAATCTCCTCCGCTCCCTCCCTCTCCGCCCTGTCTCCGTCATCTTCTCCGCCCCCGACATTCTCCGCCTCAAGCGCCGCTGCACCCCTTCCCTCAAATGCACTTCCTTCGAAGCCCTCGCCGCCCACACCTGGCAATCCTGGCTCCACTCTCTCGCCACCACCGCCGTTGTCTCCCCTCTCCCTCCTTCTCTCTCCGTCAACCTCCTCTTCTCTGTCAACGTTCGACGTCGCATGCTTCACCCCGAACCTCCCTCGGGATTCTACGGTAACGCGTTCCTCCTCGCCTGTGCCCAGTCCACCGTGAAGGACCTCACCGCCAATGCTATCGTGGGCAACATCCACCATGGCGTGACGCTCGTCCAACAAGCGAAGGCGGCCGTGACGGAGGAATATGTGCGGTCGGTGGTCGACATGTTGGACGACAGAAGTGTGAGAACCGACATGTCGGCTACATTGGTGATTTCACAATGGTCTAAACTTGGGCTTGAAGATTTGGATTTTGGAGATGGGAAACCAGTCCATATGGGGCCTCTTGCCAGTGATATTTATTGCCTGTTTTTGCCGGTTGCCGGTGATCTCTCCGCCGTTAGAGTTCTGGTTTCGGTGCCGGAATGTGTGGCCAACAAGTTTGAGTTTTATATGAAGGATTGCTGTAACAGTACTGACCATGAAGATGAAGATACAATTAAAAATAATATTAATGATAATAATAATAATAATAATGGACAACAAAATGGTTTCATCTGA 1440 51.46 MMLKSPELPDCRYMSPPVIVRPANPTPKHSLYLSNLDDQSFLRFSIKYVFLFEKGVSLCNLKRSLAIVLEHYYPFAGRLRVCGGGGSSSENDRKLEVECNGEGAVFAEGFMDLTAEEFLLMADTPNRSWRKLLYRFEALGFLDIPPLVLQVTNLRCGGMILCTGINHCLSDGIGTSQFLHAWAHLTTKPNLPLPVKPFHFRHVFKPRNPLHVTFPHPQYSKTTPSNNHLLLNLLRSLPLRPVSVIFSAPDILRLKRRCTPSLKCTSFEALAAHTWQSWLHSLATTAVVSPLPPSLSVNLLFSVNVRRRMLHPEPPSGFYGNAFLLACAQSTVKDLTANAIVGNIHHGVTLVQQAKAAVTEEYVRSVVDMLDDRSVRTDMSATLVISQWSKLGLEDLDFGDGKPVHMGPLASDIYCLFLPVAGDLSAVRVLVSVPECVANKFEFYMKDCCNSTDHEDEDTIKNNINDNNNNNNGQQNGFI 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22029349 22033304 + Lsi08G013730.1 Lsi08g01373 669299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01373 479 PANTHER BNAC03G58010D PROTEIN 13 446 - -
Lsi08g01373 479 MobiDBLite consensus disorder prediction 459 479 - -
Lsi08g01373 479 Gene3D - 14 221 IPR023213 -
Lsi08g01373 479 Pfam Transferase family 19 442 - -
Lsi08g01373 479 Gene3D - 237 445 IPR023213 -
Lsi08g01373 479 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 13 446 - -
Lsi08g01373 479 MobiDBLite consensus disorder prediction 463 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01373 - - - csv:101214598 818.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01699 Lsi08g01373 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01083 Lsi-Chr4:13017452 Lsi08g01373 Lsi-Chr8:22029349 2.97E-78 dispersed
Lsi08g01373 Lsi-Chr8:22029349 Lsi06g01658 Lsi-Chr6:26839428 4.53E-63 dispersed
Lsi11g00929 Lsi-Chr11:13318426 Lsi08g01373 Lsi-Chr8:22029349 1.79E-36 transposed
Lsi04g01699 Lsi-Chr4:24372809 Lsi08g01373 Lsi-Chr8:22029349 3.66E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g992 . . . . . . . . . Cmo12g00396 . Cma09g00136 . Car12g00421 . Cpe06g00095 Cpe07g00400 Bhi04g00196 . . . Hepe10g0614 . . Cla08g01464 Cam08g1952 Cec08g1527 Cco08g1665 Clacu08g1642 . Cre08g1427 . . . Cone20ag0123 Lsi04g01699 Csa03g04240 Chy04g00476 Cme03g01930 . Blo18g00804 . Bda01g01509 . . Bma01g00751 . . . Cmo09g00132 Cma12g00446 . . Car09g00122 . . . . . . . . . Cla05g01912 Cam05g2049 Cec05g2060 Cco05g2114 Clacu05g2044 Cmu05g1921 Cre05g2044 Lsi08g01373 Csa02g02078 Chy03g01435 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012386 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29