Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01375 ATGTTTTCAACCATGGATTTCTCTACAAATCTCCATCAACAGCTTCTTCAACTCGAAAACCAATTGCTTGTTGGTGCTGGGAGCGGCCATACTTGGACTCCCGACCTCTCGTTGTCACCAAGTTGTGAGTTTGAGCCAATTTTTCATTTTCAAGAGTTGAATCCAGCCATTGATGCACAGAGCTTTACAAGCTTGCAACATTATAATTCCCATGGAATTAGCAAAGAAAAAAGATTTGAAGAAGGGGGGAAGAAGGAGGAGAAAAAGGGCTCAGTTTCTAATAATTCTCCCAAAAAAACTGATAATGAAAATTTAAAAAGCCATGATTATAATTATTATTCAAATTTTGAAGAACTGAATAAGATTGATCAAAGCTGTTGTTGCAGCAAAATTCATCCAACTATTAATGTTTCTTCAAGGAAGCCACTGATGGCAGAGTTCTCAAGCTCTTTAGGGTTATTTGACCATACACTTTCTTTTGCTTCTTCACATCATCTCTTGGAGCAATCAAGAAATTCATCCTCTCTTCTTACTAAAATGGCAAACCATGAAATTACAAATGCAAAGAGACCTTATAGCTTGAAGCAGCAAAACCCAACTCCCAAGAAAACGCGAGTGGAGCCACGCGCCACTTGCCCTCCTTTGAAGATTAGAAAAGAGAAATTAGGAGACAGAATAGCAGCACTTCAGCAATTAGTGGCACCATTTGGTAAGACTGACACAGCATCAGTTCTAATGGAGGCCATTAGTTATATTAATTTCCTTCAAAATCAGGTTGAGATGCTAAGCCACTCTTACATGAAATCATGTCGCAACAAAAACTACAAAACGACATGTCGGGATGAATTAAATGAGGACAAAAAACAAGAAAGTGATTTAAAAGCGAAAGGATTGTGCTTAGTACCATTAGCTTGCATATCTTACTTGCCGGAGGATTCTAGCAACAGCGGTAGAGTCGGCAGCATTTGGCCACCGTTGGCGACGTCGAATTTCAATCGAAGAACATTTTGA 1011 39.07 MFSTMDFSTNLHQQLLQLENQLLVGAGSGHTWTPDLSLSPSCEFEPIFHFQELNPAIDAQSFTSLQHYNSHGISKEKRFEEGGKKEEKKGSVSNNSPKKTDNENLKSHDYNYYSNFEELNKIDQSCCCSKIHPTINVSSRKPLMAEFSSSLGLFDHTLSFASSHHLLEQSRNSSSLLTKMANHEITNAKRPYSLKQQNPTPKKTRVEPRATCPPLKIRKEKLGDRIAALQQLVAPFGKTDTASVLMEAISYINFLQNQVEMLSHSYMKSCRNKNYKTTCRDELNEDKKQESDLKAKGLCLVPLACISYLPEDSSNSGRVGSIWPPLATSNFNRRTF 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22053426 22058504 + Lsi08G013750.1 Lsi08g01375 669301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01375 336 Gene3D - 216 285 IPR036638 GO:0046983
Lsi08g01375 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Lsi08g01375 336 MobiDBLite consensus disorder prediction 73 107 - -
Lsi08g01375 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 267 IPR036638 GO:0046983
Lsi08g01375 336 MobiDBLite consensus disorder prediction 73 94 - -
Lsi08g01375 336 CDD bHLH_AtbHLH_like 218 263 IPR045239 -
Lsi08g01375 336 PANTHER TRANSCRIPTION FACTOR BHLH110 12 316 - -
Lsi08g01375 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 316 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01698 Lsi08g01375 CCT
Lsi04g01698 Lsi08g01375 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01375 Lsi-Chr8:22053426 Lsi02g00671 Lsi-Chr2:6012786 2.09E-19 dispersed
Lsi01g00645 Lsi-Chr1:5206282 Lsi08g01375 Lsi-Chr8:22053426 3.62E-39 wgd
Lsi04g01698 Lsi-Chr4:24360908 Lsi08g01375 Lsi-Chr8:22053426 2.70E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01375 - - csv:101215077 526.168