Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01378 ATGCCTTTCCTCTGCTTTTGGTGCTTTGCCGCCGTGGCCGCGGCCACCGCCGCCGCTCTCTTCGTCCTTCTCATTTTTCGATTTTTTCTGACGAAGCCGTCGTCGCGGATTTCGCATTCTTCTCCTCCGGGAAGCAGAGGTTTGCCTCTCACTGGAGAGACGCTCCAGTTCATGGCTGCTGTCAACTGCAGCAATGGCGTTTATGATTTCGTCAGAATCCGCTGCCTCCGGTATGGAGGATGCTTTAAGACTCGAATATTTGGGGAGACGCATGTGTTTGTTTCGAGCAGCGAATCGGTGAAGCTTATACTCAACGACGGCGGAGGCAGGTTCACTAAGAAGTATATAAAGTCCATTGCTAAGCTAGTCGGCCATCAAAGTTTGCTTTGTGCTTCACATTTACACCACAAATTGTTACGTAGTCGTCTTATCAATCTTTTCTCCTCCAACTTTTTGGCCTCTTTCGTAACGCAATTCGATCGACAAATCGTTTCAACGTTTCAACAATGGGAAAGCGGATCCACCATTGTCCTCCTCAACGAAGCCCTCAAAATAACATGCAAAGCAATGTGCAAAATGTTGATGAGCTTAGAGAAGGAAGACGAAGTAGAGGCAATGCAGAAAGATGTTGGTTATGTCTGTGAAGCTATGCTTGCATTCCCATGGCAATTTCCAGGGACAAGATTCCACAAAGGCCTCAAGGCAAGAAGAAGAATTATAAAAATACTCGAAGACAAAATTCAGGAGAGACGAGAATCGGAGCCTCGGTGTGCGGATTTCCTACAACGGCTGTTGACGGAGGATGACGGTGGAGAACCACTATCGGATGCAGAGATCGGAGATAATATATTGACGATGTTGATCGCTGGACAGGATACGACGGCTAGTGCCATCACTTGGATGGTGAAGTTCTTGGATGAGAACCAAGATCTCCTTCAAAATCTTAAGGAGGAACAATTTAAAATATTGGGCAAACAACAAGATAATGGGAGTTGTTTCCTTACATTGGAAGATCTTGGCAACATGACTTATGCTGCTAAGGTAGTAAAAGAATCCTTGAGGTTAGCATCCGTCGTGCCATGGTTTCCAAGGCTAATCCTCCAAGACACTGAAATTGAAGGCAATTTTTCATGTTACAAAATCAAGAAAGGTTGGAATGTTAACATTGATGTAAGATCACTACACTCAGATCCTTCTCTCTACAATGATCCTATCAAGTTTAATCCATCCAGGTTTGATGAAGAAGCAAAGCCATTTAGCTTTCTAGCTTTTGGGATGGGAGGGAGGCAATGTCTAGGGATTAATCTAGCCAAAGCCATGATGCTTGTCTTTCTTCACCGCTTGGTGACTTCTTTCAGATGGAAGGTGATTGACTCTGACTCTAGCATTGAGAAGTGGGCGCTTTTTACCAAATTAAAGAGCGGTTGTCCAATTCTCATCACACATATTGAATCTTAA 1458 44.44 MPFLCFWCFAAVAAATAAALFVLLIFRFFLTKPSSRISHSSPPGSRGLPLTGETLQFMAAVNCSNGVYDFVRIRCLRYGGCFKTRIFGETHVFVSSSESVKLILNDGGGRFTKKYIKSIAKLVGHQSLLCASHLHHKLLRSRLINLFSSNFLASFVTQFDRQIVSTFQQWESGSTIVLLNEALKITCKAMCKMLMSLEKEDEVEAMQKDVGYVCEAMLAFPWQFPGTRFHKGLKARRRIIKILEDKIQERRESEPRCADFLQRLLTEDDGGEPLSDAEIGDNILTMLIAGQDTTASAITWMVKFLDENQDLLQNLKEEQFKILGKQQDNGSCFLTLEDLGNMTYAAKVVKESLRLASVVPWFPRLILQDTEIEGNFSCYKIKKGWNVNIDVRSLHSDPSLYNDPIKFNPSRFDEEAKPFSFLAFGMGGRQCLGINLAKAMMLVFLHRLVTSFRWKVIDSDSSIEKWALFTKLKSGCPILITHIES 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22068324 22073470 + Lsi08G013780.1 Lsi08g01378 669304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01378 485 SUPERFAMILY Cytochrome P450 37 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PANTHER CYTOCHROME P450, FAMILY 722, SUBFAMILY A, POLYPEPTIDE 1 25 481 - -
Lsi08g01378 485 Pfam Cytochrome P450 42 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 Gene3D Cytochrome P450 30 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PANTHER CYTOCHROME P450 26 25 481 - -
Lsi08g01378 485 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 424 433 IPR017972 GO:0005506|GO:0016705
Lsi08g01378 485 PRINTS P450 superfamily signature 422 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PRINTS P450 superfamily signature 289 306 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PRINTS P450 superfamily signature 431 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PRINTS E-class P450 group I signature 431 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PRINTS E-class P450 group I signature 298 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PRINTS E-class P450 group I signature 421 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PRINTS E-class P450 group I signature 278 295 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01378 485 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01378 Lsi-Chr8:22068324 Lsi07g00205 Lsi-Chr7:2230672 5.69E-64 dispersed
Lsi09g01780 Lsi-Chr9:26553886 Lsi08g01378 Lsi-Chr8:22068324 5.00E-53 dispersed
Lsi02g02017 Lsi-Chr2:26173003 Lsi08g01378 Lsi-Chr8:22068324 4.62E-98 transposed
Lsi01g00654 Lsi-Chr1:5257789 Lsi08g01378 Lsi-Chr8:22068324 4.13E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01378 - - csv:101215324 763.451