Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01381 ATGTGGGTGGGTATGGAAGAGCTTGAGAATATACTGAGGGAGGTGAAATCCTATATACTTTCCTCGCCTGATGTTCTGACTCCGGTTAAGACAATAGCTGGGGGAAGTGTTGCCAACACAATACGAGGATTGAGTGCGGGGTTTGGAGTCAGCTGTGGAATTATTGGCGCCTATGGGGATGATGAGCAAGGAAAATTGTTTGTCTCTAACATGAGCTCCAATGGGGTCAATCTCTCAAGATTGAGGATGATTAAAGGTCCCACAGCTCAGGTCTGCTTCACTCCCTTCATGGAGGGGTGTCCAAATTTGCATTGTGTGTTTATGTCTTTTAAAGTTCTGAGAATGTATTGTAAATTGTACGGCAGTGTGTTTGCCTGGTTGATGCATTGGGCAATCGCACAATGCGACCCTCTCTCGCAAGTGCAGTTAAAGTTCAGTGTGCGTGTGAGTTTCGAATGCGTTTTGGATAAATTGCTCAGTTTAGTACTTTGTGGTATGCTAAACAGAGGAGATTTGATTACTAAATATACTGACCATCTATTTGGCAATGAACTGACTAGAGATGACTTTAAGGGCTCTAAGTGGCTTGTAATGAGATATAGTATATTTAACTTGGAGGTTATTGAAGCGGCTGTAAAGATGGCCAAACAAGAGATTTTGAGGTACATATTCCTAGACAACATCATTTCTATCATTTGTGTGATTTCAGCTTTGGAGAAGAGGTTGTTATATCATTTGAAAAGAAATGTAAACAAAGTAGCTCACATCTCTATATTTGGCCAGATGGTTCGAGATTTTAGATTACCTCTTCTCCAGCTACTGGAGTCCGGGGACATTGACCTTTGCTTTGCCAATGAAGACGAAGCAAAAGAGTTGATAGGGGGTGAGAAAGACGCTGATCCTGAAGTTGCACTAGAATTTCTTGCAAAGCACTGTCAATGGGCTGTCGTGACATTAGGCGCCAATGGTTGTATCGCTAAGCATGGAAAAGAGATAGTCCGAGTTCCAGCAATAGGGGAATCAAAGGTGACTGATGCCACTGGAGCAGGTGACTTGTTTGCGAGTGGGTTTTTGTATGGCTTAGTGAAGGGGTTGTCTCTGGAGAAATGCTGTCAGCTTGGATCGTGCAGCGGCGGTTCTGTCATCCGTGCCCTTGGGGGTGAGGTTACCCCAGAAAATTGGCAATGGATGCACAAGCATTTGCAGATCAAAGGGCTTCCTCTCCCTGAGATCCCTCAATGA 1242 44.12 MWVGMEELENILREVKSYILSSPDVLTPVKTIAGGSVANTIRGLSAGFGVSCGIIGAYGDDEQGKLFVSNMSSNGVNLSRLRMIKGPTAQVCFTPFMEGCPNLHCVFMSFKVLRMYCKLYGSVFAWLMHWAIAQCDPLSQVQLKFSVRVSFECVLDKLLSLVLCGMLNRGDLITKYTDHLFGNELTRDDFKGSKWLVMRYSIFNLEVIEAAVKMAKQEILRYIFLDNIISIICVISALEKRLLYHLKRNVNKVAHISIFGQMVRDFRLPLLQLLESGDIDLCFANEDEAKELIGGEKDADPEVALEFLAKHCQWAVVTLGANGCIAKHGKEIVRVPAIGESKVTDATGAGDLFASGFLYGLVKGLSLEKCCQLGSCSGGSVIRALGGEVTPENWQWMHKHLQIKGLPLPEIPQ 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22099858 22102551 - Lsi08G013810.1 Lsi08g01381 669307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01381 413 CDD adenosine_kinase 3 386 - -
Lsi08g01381 413 PANTHER SUGAR KINASE 183 220 - -
Lsi08g01381 413 Gene3D - 4 99 IPR029056 -
Lsi08g01381 413 PANTHER CARBOHYDRATE KINASE-LIKE 261 404 - -
Lsi08g01381 413 PANTHER SUGAR KINASE 261 404 - -
Lsi08g01381 413 PANTHER SUGAR KINASE 3 91 - -
Lsi08g01381 413 Pfam pfkB family carbohydrate kinase 250 386 IPR011611 -
Lsi08g01381 413 PANTHER CARBOHYDRATE KINASE-LIKE 183 220 - -
Lsi08g01381 413 PANTHER CARBOHYDRATE KINASE-LIKE 3 91 - -
Lsi08g01381 413 Gene3D - 174 390 IPR029056 -
Lsi08g01381 413 SUPERFAMILY Ribokinase-like 27 387 IPR029056 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01381 - - - mcha:111014039 368.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00714 Lsi-Chr8:15467000 Lsi08g01381 Lsi-Chr8:22099858 8.08E-07 dispersed
Lsi08g01381 Lsi-Chr8:22099858 Lsi03g02022 Lsi-Chr3:31588500 8.50E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g967 . . . . . . . . Cmo05g00262 Cmo12g00406 . . . Car12g00431 . . Cpe07g00408 Bhi04g00190 . . . Hepe10g0623 . . Cla08g01471 Cam08g1959 Cec08g1534 Cco08g1672 Clacu08g1649 . Cre08g1434 Cone4ag1920 Cone7ag1832 . . . . . Cme03g01937 Blo17g00786 . Bda08g01276 . . Bpe05g00101 . Bma05g00129 . . . Cma12g00456 Cma05g00257 Car05g00214 . Cpe11g00212 . . . . . . . . . . . . . . . Lsi08g01381 Csa02g02070 Chy03g01442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006701 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 3 38