Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01384 ATGGAAATACAGAACATAGCTTACATTGATCTTCAACGGAGCTTCCTGTTACAGTCCAATCCAGATCCAAGAATTAGAATGCAGGGGATCGTGAGAGCAGTGCGATCGTGGCAAGAGACGTTGAAGAAGATCGCAATCTCGCATCAGTCGTGTAGGAGAGAAACAAATAAAGTGGAAAAGTTATTGGAAGGATCGGTATTAGAAGGTGGTCCGTCTTCTCCGCTGAAAGGTTTGGAGAATATTACTGTGGCAGAGGTCGTTAAGAAAAAGGGAGATGGAAGTATTGGGTCCGCTTGGTTATCCTGTAAAGCGGAGGATACCGCCATTGACGCCGTGCAAAATATGGCTAGAAATAACATTGGATCTCTGGTGGTGTTGAAATCTGAAGGAGAACACATTGCTGGAATTGTCACAGAACGAGACTACCTGAAGAAAATAATAGCAGATGGGAGATCTCCCATATACACAAAAGTTGGAGAAATAATGACTTGCGAGGACAAACTAGTAACTGTAACGTCCGACACGAACATCCTTAAAGCAATGCAGCTTATGACAGAGAATCGCATAAGACATGTTCCTGTGATAGATGGCAAACTAGTTGGCATGATTTCTATAGTAGATGTTGTCAGAGCAGTTGTAGAGCAGCAAAATGGAGAACTCGAGCGACTAAACGAGTATATAAAAGGAGAATATTATTAA 699 42.2 MEIQNIAYIDLQRSFLLQSNPDPRIRMQGIVRAVRSWQETLKKIAISHQSCRRETNKVEKLLEGSVLEGGPSSPLKGLENITVAEVVKKKGDGSIGSAWLSCKAEDTAIDAVQNMARNNIGSLVVLKSEGEHIAGIVTERDYLKKIIADGRSPIYTKVGEIMTCEDKLVTVTSDTNILKAMQLMTENRIRHVPVIDGKLVGMISIVDVVRAVVEQQNGELERLNEYIKGEYY 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22122449 22126429 - Lsi08G013840.1 Lsi08g01384 669310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01384 232 CDD CBS_pair_bac_euk 96 210 IPR044725 -
Lsi08g01384 232 Gene3D - 76 231 IPR046342 -
Lsi08g01384 232 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL 27 231 - -
Lsi08g01384 232 SMART cbs_1 167 213 IPR000644 -
Lsi08g01384 232 SMART cbs_1 98 147 IPR000644 -
Lsi08g01384 232 SUPERFAMILY CBS-domain pair 100 219 IPR046342 -
Lsi08g01384 232 PANTHER CYSTATHIONINE BETA-SYNTHASE (CBS) FAMILY PROTEIN 27 231 - -
Lsi08g01384 232 Pfam CBS domain 158 213 IPR000644 -
Lsi08g01384 232 Pfam CBS domain 101 146 IPR000644 -
Lsi08g01384 232 ProSiteProfiles CBS domain profile. 162 220 IPR000644 -
Lsi08g01384 232 ProSiteProfiles CBS domain profile. 95 154 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01384 - - - csv:101215323 336.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01384 Lsi-Chr8:22122449 Lsi10g01496 Lsi-Chr10:19160079 1.36E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g958 . . . . . . . . Cmo05g00259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01694 . Bma01g00759 . . . . . Cma05g00253 Car05g00211 . . . . . . . . . . . . . . . . . Lsi08g01384 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012002 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 0 30