Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01395 ATGGGTGAGAACCTTGGGACTGTTGTGAACGACAAGAGAACACAGTCTCTTGATGTTACCCACTTTGAGGATGTCCAGGAGCCGTGCATATGGTCATCATCAGTAGAATGCAAAATTGATATTGGAAAGCAGATCTTTTGCAATAGATCTTTGAATATGAAAAATATTGTTGCCGTGGGGTTTGACATGGATTACACGTTGGCACAATACAAGCCAGAAACTTTTGAATCCCTTGCATATGAAGGCACAATAAGAAAGTTGGTTTATGATTTGGGATATTCTGAAGAGTTGCTGAATTGGTCATTTGATTGGAAATACATGGTCAGAGGTTTGGTTCTTGATAAAAGGAGAGGCAACATATTGAAGATGGATAGGCACAAGTATGTCAAAGTGGCTTACCATGGTTTCAAAGAGTTGTCCAAGGATGATAAAGTTGGGACCTATGGAAATACTCTTGTGCGGGATTCTTTTGATGAACCTGACTATGCTCTCATTGATACCCTTTTTTCACTAGCTGAAGCCTACTTGTTTGCTCAACTGGTTGACTTCAAGGATAACAATCCAGACAAAGTTCCAGAAGATATCGACTATGCTCGGATGTACAAAGATGTTAGAGCTGCAGTAGATTTGTGTCACCGTGATGGAACCTTGAAGCAAATGGTTGCAAAAGATCCTGAAAGATATATCAATGTAGATACGTCAATTTTGCCCATGCTTAAAATGCTCAGAGATTCCGGCCGTTCTACTTTCTTGGTGACAAACAGTTTATGGGACTATACCAACGTCGTGATGAACTTCCTATGTAATTCTTCTGCATCAGATGGTGATCGCAATTTCGATTGGCTTCAGTATTTTGATGTTGTTATCACTGGCAGTGCTAAACCAGGCTTTTTCCATGATGAGAACCGTGCTAATTTATTTGAGGTTGAAGCAAAGTCCGGAATGCTACTTAATACTGATAATGGTTCACCGATGCCTCAGGTGGGAATGCCATCGCTAGCTTTATCACCTACAAAGTTAGGTAAATCTTGCAGAGTTTTTCAGGGAGGCAATGTCAGGCATCTGCACAAACTTCTTTCCATTGAATCAAGTTCACAGGTTCTTTATGTTGGAGATCACATCTACGGAGATATATTACGGAGCAAAAAGGCTCTTGGATGGAGGACTATGCTTGTTGTTCCAGAGCTCGAAAGGGAGGTCGAGCTCTTATGGGAGTTGAGGAAGACCCGCAAGCAACTTCAGCAATTAAGAAATGAGCGGGATGCCATTGAAGACAAAATACATCATTTGAAGTGGTCTCTCAAGTACTTTTTCTGGACTTTTTCCTCACTTTGTGTCTCTTTCTTTGTCCTGCTGCACCCTGCCCTCAACAAGTTTTTGTATAGGTTTGAAGATGTTGAGGCTGATGAGAAGGACAGATTATCTACCGGACTACGTCAGTTAGAGGTGATGCTCAAGAATCATCATAATTCAACTGGTGAACGAGAACGAGTGCGGCTGAGTCATCAAGACGCTCTACGGGAATTGCACCGACAGTTTCATGGAGTTTGGGGACAGCTGATGAAGACTGGATATCAAAACTCTAGGTTTGCTCATCAAGTAGAGAGATTTGCATGCCTTTACAGCAGCCAAGTGACCAACTTGGGCCTATATTCCCCAGATAAATACTACAGGCCAAGTGAAGATTTTATGCCCCATGAATTTGGCATCATCCCTTTGTGA 1722 41.87 MGENLGTVVNDKRTQSLDVTHFEDVQEPCIWSSSVECKIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYSEELLNWSFDWKYMVRGLVLDKRRGNILKMDRHKYVKVAYHGFKELSKDDKVGTYGNTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDNNPDKVPEDIDYARMYKDVRAAVDLCHRDGTLKQMVAKDPERYINVDTSILPMLKMLRDSGRSTFLVTNSLWDYTNVVMNFLCNSSASDGDRNFDWLQYFDVVITGSAKPGFFHDENRANLFEVEAKSGMLLNTDNGSPMPQVGMPSLALSPTKLGKSCRVFQGGNVRHLHKLLSIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELEREVELLWELRKTRKQLQQLRNERDAIEDKIHHLKWSLKYFFWTFSSLCVSFFVLLHPALNKFLYRFEDVEADEKDRLSTGLRQLEVMLKNHHNSTGERERVRLSHQDALRELHRQFHGVWGQLMKTGYQNSRFAHQVERFACLYSSQVTNLGLYSPDKYYRPSEDFMPHEFGIIPL 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22225637 22232187 + Lsi08G013950.1 Lsi08g01395 669321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01395 573 Pfam 5' nucleotidase family 45 568 IPR008380 -
Lsi08g01395 573 SUPERFAMILY HAD-like 43 569 IPR036412 -
Lsi08g01395 573 Gene3D - 205 423 IPR023214 -
Lsi08g01395 573 Gene3D - 41 91 IPR023214 -
Lsi08g01395 573 PIRSF NT5C2 28 572 IPR016695 -
Lsi08g01395 573 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 492 571 IPR008380 -
Lsi08g01395 573 PANTHER CYTOSOLIC PURINE 5-NUCLEOTIDASE 492 571 - -
Lsi08g01395 573 Coils Coil 399 433 - -
Lsi08g01395 573 PANTHER CYTOSOLIC PURINE 5-NUCLEOTIDASE 23 435 - -
Lsi08g01395 573 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 23 435 IPR008380 -
Lsi08g01395 573 CDD HAD_cN-II 46 417 - -
Lsi08g01395 573 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 45 413 IPR008380 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01395 - - - csv:101216999 1006.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01395 Lsi-Chr8:22225637 Lsi09g01532 Lsi-Chr9:23423731 4.70E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48