Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01401 ATGGCTTCTCTAATCTCTGACACCGAGGCATGGAAGAATCTGAAGGCTCATGTTGAGGACATTAACAAGACCCATCTGCGTGATTTGATGAGCGATGCTGCCAGATGCAAATCCTTGTTGGTTGAGTATGATGGGATATTGTTGGATTATTCACGACAACGCGCCACCTTTGACACCATTGGAAAGCTCTTCAAGTTGGCAGAGGCGGCAAATCTCAAGGCAAAAATTAATCGGATGTACAATGGGGAACATATAAACAGCACAGAAAATAGGGCAGTCCTGCATGTTGCTCTTCGTGCATCAAGAGATGCAACAATACAGAGTAACGGAAAAAATGTTGTGCCTGATGTCTGGAACGTTCTTGATAAGATTCAGGATTTCTCTGAGAAAGTTCGCAATGGTTCTTGGGTTGGAGCCACAGGAAAACCTCTGAAGGATGTTGTTGCTATTGGCATTGGTGGCAGCTTCTTGGGGCCTCTGTTTGTGCACACTGCACTTCAAACAGATCCAGAGGCTATTAAATCTGCAGAAGGACGTCAACTACGTTTTCTTGCTAATGTGGATCCCATTGATGTGGCGAGAAATATCACTGGTTTAAACCCTGAAACTACTTTGGTTGTGGTGGTTTCAAAGACTTTTACCACTGCTGAAACTATGTTAAATGCTCGGACACTGAGGGAGTGGATTTCTGCGGCTCTTGGGTTAGTAATCATCTACAATATTATTGTTAAGGTTGTTTTGGCATCTCTACTTCATATAGGTAGAGGCATCGCATGGCCTTCAGCTGTTGCAAAGCATATGGTAGCAGTTAGCACAAACCTCCCGCTTGTAGAGAAGTTTGGAATTGATCCTAATAATGCCTTTGCATTCTGGGACTGGGTTGGTGGACGGTACAGTGTTTGCAGTGCTGTAGGAGTGTTGCCTTTGTCTCTTCAATATGGCTTCGCAGTTGTTGAGAAATTCTTGAAGGGAGCTTCAAGCATTGACCAGCATTTCTACTCCTCTCCTTTTGAGAAAAACATTCCAGTGCTTTTGGGATTGTTGAGCGTATGGAATGTTTCTTTTCTTGGGCATGCTGCGAGAGTTAGCATGGAGAGTAATGGCAAGGGCGTTTCAATAGATGGGGTTCCACTCCCTTTTGAGGCTGGAGAAATAGACTTTGGGGAACCTGGAACCAACGGCCAGCACAGTTTTTACCAATTAATTCACCAAGGGCGTGTTATTCCTTGTGATTTTATTGGTGTTGTAAAGAGCCAGCAACCCGTTTACTTAAAAGGTGAGGTCGTGAGTAATCATGATGAACTCATGTCTAACTTCTTTGCACAGCCAGATGCCCTAGCCTATGGGAAGACACCAGAGCAATTGCACAAGGAGAATGTTCCAGAGCATCTTATTTCCCACAAGACATTTTCGGGCAATCGGCCTTCCCTCAGCATTCTTCTTCCATCATTAAATGCTTACAACATTGGTCAGTTGCTGGCAATCTATGAGCATAGAATTGCTGTAGAAGGTTTTGTTTGGGGCATCAATTCTTTTGACCAGTGGGGAGTTGAATTGGGCAAGTCACTTGCTACCCAGGTTCGAAAACAACTCAATGCATCTAGAACAAAGGGAGAATCAATTGAAGGCTTTAACCACAGTACAACAACATTGTTGAAAAGATATCTAGAGGCGAGTTCTGACGTCCCATCTGATCTTCCTACTCTTCTACCCAGAATTTAA 1722 43.84 MASLISDTEAWKNLKAHVEDINKTHLRDLMSDAARCKSLLVEYDGILLDYSRQRATFDTIGKLFKLAEAANLKAKINRMYNGEHINSTENRAVLHVALRASRDATIQSNGKNVVPDVWNVLDKIQDFSEKVRNGSWVGATGKPLKDVVAIGIGGSFLGPLFVHTALQTDPEAIKSAEGRQLRFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISAALGLVIIYNIIVKVVLASLLHIGRGIAWPSAVAKHMVAVSTNLPLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFAVVEKFLKGASSIDQHFYSSPFEKNIPVLLGLLSVWNVSFLGHAARVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAYGKTPEQLHKENVPEHLISHKTFSGNRPSLSILLPSLNAYNIGQLLAIYEHRIAVEGFVWGINSFDQWGVELGKSLATQVRKQLNASRTKGESIEGFNHSTTTLLKRYLEASSDVPSDLPTLLPRI 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22292071 22299712 + Lsi08G014010.1 Lsi08g01401 669327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01401 573 Gene3D - 95 319 - -
Lsi08g01401 573 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 5 559 - -
Lsi08g01401 573 Pfam Phosphoglucose isomerase 49 361 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 Gene3D - 10 513 - -
Lsi08g01401 573 ProSitePatterns Phosphoglucose isomerase signature 1. 292 305 IPR018189 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 8 558 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 CDD SIS_PGI_2 364 527 IPR035482 -
Lsi08g01401 573 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 5 559 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 Hamap Glucose-6-phosphate isomerase [pgi]. 43 531 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 ProSitePatterns Phosphoglucose isomerase signature 2. 504 521 IPR018189 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 SUPERFAMILY SIS domain 6 559 IPR046348 GO:0097367|GO:1901135
Lsi08g01401 573 PRINTS Glucose-6-phosphate isomerase signature 147 166 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 PRINTS Glucose-6-phosphate isomerase signature 472 490 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 PRINTS Glucose-6-phosphate isomerase signature 288 306 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 PRINTS Glucose-6-phosphate isomerase signature 504 517 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 PRINTS Glucose-6-phosphate isomerase signature 490 504 IPR001672 GO:0004347|GO:0006094|GO:0006096
Lsi08g01401 573 Gene3D - 514 559 IPR023096 GO:0004347|GO:0006096
Lsi08g01401 573 CDD SIS_PGI_1 118 311 IPR035476 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01401 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - csv:101217944 1052.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01037 Lsi-Chr8:18964395 Lsi08g01401 Lsi-Chr8:22292071 4.06E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g932 Blo01g01559 . Bda01g00534 . Bpe02g00396 . . Bma01g02316 Cmo05g00243 Cmo12g00427 . . . Car12g00451 . . Cpe07g00429 Bhi04g00254 . . . . . . Cla08g01496 Cam08g1986 Cec08g1561 Cco08g1698 Clacu08g1676 . Cre08g1459 Cone4ag1905 Cone7ag1820 . . . . . Cme03g01964 . . . . . . . . . . . Cma12g00477 Cma05g00235 Car05g00195 . Cpe11g00194 . . . . . . . . . . . . . . . Lsi08g01401 Csa02g02045 Chy03g01468 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004710 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 40