Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01403 ATGGCCGGCCGCTTCGACTTTGGTTCTCGTCCCAATCTCTCTGTCTCCAGTCCTCTCCATGCTGCCAATGATGTTCAGGGATCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCTAAGCCAGGGGAGAGTAAGCATGGAATTGGAACTGGGGAAAACCATTTCAGTCATCAACCTGCTTATGGAAATCGCATGGATACGATGAAGGGATCTGAGAATTATGAGGATATGAATGACATACAGAAGAAAAAAGAAGTTTTTAGGCCATCCTTGACTGATTCTGAAATTGGTAGGCGTGACCGTTGGCATGATGAAGAAAGAGAAAATAATTCTTCAATGCGTAAAGATCGTTGGAGGGATGGTGAGAAAGAGATGGGTGATAGTCGCAAGATGGATCGTTGGAATGAAGACTCATCCACAAGAGTCTTTAGAGAATCTCGCCGAGGACCATCAGAACGCTGGTCTGATTCAAACAATCGGGACAATGTTCATTATGATCAACGGCGAGAGAGCAAATGGAATACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGGGTGGAATCGGGAAGAGATGGTGATTTGCATCTTGACAAAAATTTCTCTCATGTGTCCAATTATGGGAAAAATGACAGAGATGGAGATCATTATCGCCCATGGAGGTCTAGTTCCTTGCAGGGTCGAGGTAAGGGAGATCCCCCTCACCATCAAACCCAAACTCCAATCAAACAAGTCCCTGCATTTGCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCTTTAGGACGTGGAATCATCAGTTCTGGTGTAAATCCTACCAATAGTATTTATTCACCTCCTAATTATCTTGGAGCCTCTTCCGAGAAATCTGGAAGAGAGCCTTACTACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAATCTGACATCACAGCAAACTCTAAAAGATGGATTTGTGCCTGTGCCTACTCTTACGCTGGACGAACCTTTGGAGCCTCTTGCTCTTTGCACACCAACTACGGAGGAAATGACTTTCTTGAAGGGGATTGATAAAGGGGAAATTGTCAGTAGTGGTGCACCTCAAGTGTTAAAGGATGGTCGAAACTCATCAGAATTTATGCAAGCAAGACGAACGAAACCTGGTGTTTCACCCTCCTTAGGCAGTAGAGAGGATTTACCTCATGGCTTTGATGATTACAACGATGATAAGGATGACGGCACCAATAAACCTGGTCACACAAACTATTCAGAGGTCTCAACTGAGAGGCAGGTGCCTTATCACAGGCCCCAGACAAAAATTGAAGCCATTCAGGAACACATGGGGCATACTAGTGGTACCTTCAAATCTGAAGCTTTCAGAGAAGATGACAACGCAATAAGAAAAACAGACGAGGTGCCTATCAATAGGGAATCAAGTATTAAGGGGGGTACCAATGTCCATCCTGGCAGCACGTGGGATGCCTCATCACTTGAGCAACCCCTGAATACATCTTTGCCTGATTGGAGAGAAAATCCTAATAATATTAGCTCAGGAACTCCTGACAAGGGTTGGCTACAGTCTTCAAAGAATCTTAATGATGGGTGGGGAAGTAACTCAGCTACTCCATCTTTTCCGAAGGATAATCCCAAATGGCAGACCGGTGAAGAATCTATCATTAGAAGGCAGCTTTCTGGGATTTTGGACAAGGAGCAACTAGCAAGGAAAACTGTTCAATCTGCTCCAGAGGATTTGCAACTTCATTACATTGATCCTTCTGGTGCAATTCAGGGCCCTTTTAGTGGGGCTGACATTATTCAGTGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCCCATAAATGCACCAAATGACTTGCCATTTGCAGCACTTGGTGATGTTATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTAGTGGACCAAAGCAGAATGAATTTGCAGATTCATTAGGTAACGCTAGTTATGGTAGCTTGGGAAAGCTTCATACTGGGTTGAATGAGATAGATACTATGAGGAACGAGACAAGGCATAAACATGGCTCAACGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTTATGTCTGGTAATATAGGTTCTACACCTCTCGAGAAGAGTGCCTTTTCTGAAGGTGTGCCAGGATATTTTGGAAATAATTCTAATAGTTTGCCTTCGTTGGGAATAGACAATGGAAACAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAACGGCAAAGGTCTTTGTCCAACCCTTATGCATTTTGGCCTGGAATGGATGCTACATCCAAGGTATCTAAGCCGGATATTGGCCTAGATGATCCAATTCAGCAAGCCAAACTCTTGTCTTCAATCATAGACCATTCTCGTCAAACTTCTCATTCTCAAGGTGCCGACATGTCAGCCATTCTACAAGGCTTGTCTGACAAAGCACCTCCTGGCATTAATGACGTTGCTGGCTGGTCAAAATTTGCTCAGTGTGCTCCCGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACTTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTGCAACCACAGCCGTCCTTGACAAATTTACTTGCTCAAGCTACTGATAATCCTACCTTAACTCCAGATAAGTTTCTTCCTTCTAGCTTATCTCAAGATCCACAACTGATAAGTAAACTGCAACAGCAGCACCTGTTGCAGTTGCATTCTCAAGTGCCTTTCTCTGCACAACAAATGTCATTGTTGGACAAACTTTTATTACTAAAGCAGCAACAAAAACAAGAGGAGCAACAACAGTTATTACAGCAACAGCAGTTGCTCTCACAGGTTCTATCAGAGCATCAGTCACGTCAGCATTTTATCGATCCATCTTTTGGACAGTTACAAGGTGCTCCAATACCTATTGGAAATGCATCTACTGATCCATCTCAAGTCCAGCAATCACGAGAAAAGTTTCAAATTGGTTCACAGAATCCCTTAAATGTCGCAACTGATCGTGCGACTCCCTTCGGAAATATGGCTTTGCAAGTTACCCAGGGAGCCAGTTACAATGTTAATTCAGAAGATCCGTCGCTTGCTCTTCCGCATCAAATGTTTGGAAATGTTCTTCAGCAGAAGAGTTGGACACCTGCGCTCCCAGAGCAGCTTAATGATACTCGTCCGAAAGATATGTTACCTGGATCTAAAGTTGGTGAGGGCTCACTTTTTCCTGCGCTCAGCAAATCAAATGAGGATGTGAATCTTGTACCAAAGTCATCTGATAGCCACACTATTAAAGCTTTGGAGCAGATAGCAGAGGATGTACTAAGGCTGGATGCAACTGTCACATATCTTGCATCTGATGCTATGGTAGAACCTCTTCCTCTCAAGACTGCTGAAATCTCAGTTGCTATACAACCAGCAGAAGTTCATGATATTGAAGTTTCCATTCCCGATAGTGTACCTGTTTTGAAGGTTCAAGAAGCTAGTATGCCTGTGGAAAAACTTGAAAGGGGTGTATGCAAAGACGAGACCTCCTTGGAGATGGAACCGAAAAATATTGAAGTACAAGAACCTAGAAAATCTTCTGATAAGAAGACCAAGAAGCAAAAATCTTCGAAGTTGCTTTCCTCAGACCAGGCCAAGGACTCTAAGAATTCTGCTATTCAGCAGTTAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGGCAGATAATATTGTGGGAAAGTCTGGTGATACAGCTTCCTCACCTAGGAAGATCAGAGATGGGGATGGCAAAATTTCTGTTGTGGATAGTCAGCCAGTTCAATGCTCTGCCTCTGCTATAAATACCTGGAACGATGGTGAAACTGTTCAAGTGAAGGATGACGCCAGACTAGTTGGGTCCGACTCTGTGCTTAACTCACAAACTCAATCTGGCCAAAGAGCTTGGAAAGTTGCTTCGAGTTTCAAGCCAAAGTCGTTGTTGGAAATTCAGGAGGAAGAGCAGAAAAGGGCACATACAGAAACTGCTGTATCAGACATTTCCACTTCTATCAACTCTATGAGTCTATCAACTCCTTGGGCTGGGATCGTGAGCAGTGCAGACCCTAAAGCTTCCAAAGAAATTCATAAAGATTCTGTGATTTCAGAATCAAGTGAGAAATATGAAAATTTATCGACTTCAAGGAGTAGAAAGAGCCAATTGCATGATCTGCTGGCAGAGGACGATACTGAAAAGTCTGGTGCAGGTGATGCTCGTGTTTCTGACTCTGTACAGATTGCTTCTTCCCCTCGTGTCATGGCCACACAAGCAGAACCCATGGATGACAATTTTATTGAGGCAAAAGACACCAAAAAGAGCCGCAAGAAGTCTGCTAAGGCTAAGGGTGTTGGTACCAAGGCCTCCTCTGCAGTCCCTTCTGCTGATGTGCCTGTTGGTTCAAGTCCCATTGAGAAAGGGAAAATCTCCCGCCAAACCCAGCAGGAGAAGGAAGCAATGTCTGCCATTCCTTCTGGGCCTTCTTTTGGTGATTTTGTTCTGTGGAAGGGAGAAGCTGCTAACGTGGCCCCTGCTCCAGCATGGTACAGCGACTCTGGGAAGGTCCCCAAACCCACATCTTTGAGGGATATTCAGAAGGAGCAGGGAAGAAAAATCTCTGCTGCTCAGCATTCTCATCAAATCCCTACTCCCCAAAAGGCTCAGCCTACTCAGGTTGGTCGTAGCAGCAGCACTAGTACTCCTTCCTGGGCTCTCTCAGCATCTTCTCCATCGAAGGCTGCATCATCCCCCCTTCAGAACATTCCTACTCAGTCAAAACATGGAGGCGATGATGACTTATTTTGGGGCCCCATTGAGTCAAAGCAAGAAAATCAGCAGGTTGATGTCCGTCTTGGGAACCATGGCAGCTGGGGAAATAGGAACACCCCTGCAAAAGCAGTAGCTTCGACTGGGTTGTTAAGCCGACAAAAATCATCTGGTAGCAAAGCTGACTATCTCTCATCCTCACCTGCACAGTTGTCTCAGAAAGGCAAACAAGATCCAGTTACCAAACATTCAGAAGCTATGGGCTTCCGCGATTGGTGTGAGAGTGAATGTGTAAGGCTCATTGGGACAAAAGACACAAGTTTCCTGGAATTCTGCTTGAAGCAATCGAGATCCGAGGCAGAGCTATTTTTGATAGAGAACCTTGGATCATATGATCCTGACCATGACTTCATTGATCAATTCCTCAATTACAAGGAGTTGCTCCCGGCAGATGTTCTTGAAATTGCATTTCAAAGTCGCAATGATAGGAAGGTATCTGCTATAGCTTCCCGAGAAGTAAATTCTGGCAATGCTGGTGGGGATGTGGACCCTGATGTCCCTGTTGGCCGTGATGGGTCCGCAAAGAGTGGAGGAAAGAAGAAAGGAAAGAAAGGGAAGAAGGTTAGTCCATCAGTTTTGGGTTTCAATGTAGTTAGTAACCGAATCATGATGGGTGAGATTCAGACGGTTGAAGATTAG 5544 44.53 MAGRFDFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGIGTGENHFSHQPAYGNRMDTMKGSENYEDMNDIQKKKEVFRPSLTDSEIGRRDRWHDEERENNSSMRKDRWRDGEKEMGDSRKMDRWNEDSSTRVFRESRRGPSERWSDSNNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVESGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSLQGRGKGDPPHHQTQTPIKQVPAFAHRGRADNTPPTFSLGRGIISSGVNPTNSIYSPPNYLGASSEKSGREPYYYKYSRTKLLDVFRTTNLTSQQTLKDGFVPVPTLTLDEPLEPLALCTPTTEEMTFLKGIDKGEIVSSGAPQVLKDGRNSSEFMQARRTKPGVSPSLGSREDLPHGFDDYNDDKDDGTNKPGHTNYSEVSTERQVPYHRPQTKIEAIQEHMGHTSGTFKSEAFREDDNAIRKTDEVPINRESSIKGGTNVHPGSTWDASSLEQPLNTSLPDWRENPNNISSGTPDKGWLQSSKNLNDGWGSNSATPSFPKDNPKWQTGEESIIRRQLSGILDKEQLARKTVQSAPEDLQLHYIDPSGAIQGPFSGADIIQWFEGGYFGLDLPVRPINAPNDLPFAALGDVMPHLRSKAKPPPGFSGPKQNEFADSLGNASYGSLGKLHTGLNEIDTMRNETRHKHGSTVEAENRFLESLMSGNIGSTPLEKSAFSEGVPGYFGNNSNSLPSLGIDNGNNLFLLAKRMELERQRSLSNPYAFWPGMDATSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHSQGADMSAILQGLSDKAPPGINDVAGWSKFAQCAPDPLQSKLDLHHDLNLSSQAPFGFQQQRLQPQPSLTNLLAQATDNPTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQQLLSQVLSEHQSRQHFIDPSFGQLQGAPIPIGNASTDPSQVQQSREKFQIGSQNPLNVATDRATPFGNMALQVTQGASYNVNSEDPSLALPHQMFGNVLQQKSWTPALPEQLNDTRPKDMLPGSKVGEGSLFPALSKSNEDVNLVPKSSDSHTIKALEQIAEDVLRLDATVTYLASDAMVEPLPLKTAEISVAIQPAEVHDIEVSIPDSVPVLKVQEASMPVEKLERGVCKDETSLEMEPKNIEVQEPRKSSDKKTKKQKSSKLLSSDQAKDSKNSAIQQLKQSKSGKSENDLKLKADNIVGKSGDTASSPRKIRDGDGKISVVDSQPVQCSASAINTWNDGETVQVKDDARLVGSDSVLNSQTQSGQRAWKVASSFKPKSLLEIQEEEQKRAHTETAVSDISTSINSMSLSTPWAGIVSSADPKASKEIHKDSVISESSEKYENLSTSRSRKSQLHDLLAEDDTEKSGAGDARVSDSVQIASSPRVMATQAEPMDDNFIEAKDTKKSRKKSAKAKGVGTKASSAVPSADVPVGSSPIEKGKISRQTQQEKEAMSAIPSGPSFGDFVLWKGEAANVAPAPAWYSDSGKVPKPTSLRDIQKEQGRKISAAQHSHQIPTPQKAQPTQVGRSSSTSTPSWALSASSPSKAASSPLQNIPTQSKHGGDDDLFWGPIESKQENQQVDVRLGNHGSWGNRNTPAKAVASTGLLSRQKSSGSKADYLSSSPAQLSQKGKQDPVTKHSEAMGFRDWCESECVRLIGTKDTSFLEFCLKQSRSEAELFLIENLGSYDPDHDFIDQFLNYKELLPADVLEIAFQSRNDRKVSAIASREVNSGNAGGDVDPDVPVGRDGSAKSGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTVED 1847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22303261 22312595 + Lsi08G014030.1 Lsi08g01403 669329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1384 1398 - -
Lsi08g01403 1847 CDD GYF 590 647 IPR003169 GO:0005515
Lsi08g01403 1847 SMART gyf_5 591 646 IPR003169 GO:0005515
Lsi08g01403 1847 ProSiteProfiles GYF domain profile. 590 641 IPR003169 GO:0005515
Lsi08g01403 1847 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1847 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 374 440 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 485 558 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 405 424 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1346 1365 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1399 1413 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1461 1518 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1381 1443 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1190 1279 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 376 390 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1414 1430 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1567 1619 - -
Lsi08g01403 1847 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1847 - -
Lsi08g01403 1847 Pfam GYF domain 594 629 IPR003169 GO:0005515
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1672 1692 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 10 33 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1789 1824 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1539 1629 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1190 1226 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1 247 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 470 558 - -
Lsi08g01403 1847 Coils Coil 948 968 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1227 1245 - -
Lsi08g01403 1847 SUPERFAMILY GYF domain 582 647 IPR035445 -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1672 1698 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 1499 1514 - -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 425 440 - -
Lsi08g01403 1847 Gene3D - 578 659 IPR035445 -
Lsi08g01403 1847 MobiDBLite consensus disorder prediction 71 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01403 - - - csv:101216765 3175.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01403 Lsi-Chr8:22303261 Lsi09g01748 Lsi-Chr9:26132221 2.86E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44