Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01407 ATGTATGTTTACTGTAATAGTGAATTGTTAACGTTTCACTCACTCTCTCAATTTCCCGCCAGACGAATTGGCGCGAAACTCAAGCCCCTCTCTAATATCTCTTCCCTGTTCGCGGGATTAGCCCTAGATCTCCCTCCCTCCTTTTTCTTCCACTGGAGTGCCCTGCTTCGCCTTCTGCCCGTTGATCGCGCTACTTCTCCGTCGTTTCTCAACCTCGCCGGCGGCGGTTCAGAGAGTCTTATTACTGGAGAAGCATTATCTTGGTTCAATAAGGGGAAGAATCATACTTATCTAATGGAATTACGTAGTTTCGGTCATTTGCATTATATCCATGCCATTAAAGGTGGTGTGATAACTAAGGTTTTGAACATCAATCGTGGAAAGCCTGCAGCTGTATTTAAGAAGCTTACTGACATATATGGATCTCTAGATGACAAAGCTCAAGAATCACTCCAAACACGACAGTCAAGAGACGGTTTGGAAGAAAATATTCCTGATGGACGTGAGTTCAAGGTGGAAACCCAAGTTCTTTACGCAGAAAGAAAACTATTCAATGACGAGCCCGAAGTTTCTGATTCTGGCAGTAAAGGTGATAGCGACGAGCAAAATAGTGATCTAGAAGTTGATAGCATGACTTTAAAACAGATAATGGAAGGTTGCAAGAAAAGAAAGTTGAGCCAGTTAAGATCTGTTGACTCAAGTAAGGAAAAACTGACATGTTCCAGACGAGAACTTGATCATTCAAACTTGTTGCCTGATGAGGATGATAGTGATCTTAATGTAGCTCTTAGCATCTGGAAGTCTAAACTTTCAAAACGCAGAAAATTGAAAACCAAATGTGAAGAAAGCAGAATATCTACCAGTTCACAGTGCGTCCAAACAATTAGAAATTCTGACCCGATCAATAGTGATCAAGGTCTGCTTCCATCTGGTTCAGACCTACCCCTCCCAGTAGACGTTAAAGTTGAAACTCCTGAAACCAATGTGACAGAAATCCAGAACACAGACTACATGATTGATGAGTGGTCTCTATTTTGTGATGAAAATATAAACTTGTGTCTGAGTTATGAGCCTGTTGGACCTGATGATTTAAATTTAGATATAGGGTTGACAACATCTGAGAAAGAAGCTGAATATTGTCTTCTAAACAGTGCATGTCATGAATGTTTGGAAGGCAATGAACCCGGAACTCTTCAGATGGTAGGGGAATCCAGCACCAAGTTGATGAATGAAGATAACCTGGAGGTACACGGACCCCATCATTCAGATTTTTCTGCATCAGAGAGCATGAAGGGACAACATACCCCAAGTTATGTATCCAATTATAGTATGCCAGAAGCTATTCCCCTGACTAAGGAACAGTGCTCTGGCACTTATATTTCCCTAAACAATTCTACTACAAACGGGGTCGTATGTCAGACTAACAGCGAAGGAATGTCAGAAGCATTTGCCCTGACTGAGGAACAGTGCCGTGACACTTATATTTCAGAAGGTGAACCCTTTACACACGAGGCCACATGTCTGAATAATGGTGAAGGCTTTACTCATTTGCATGCAATGACTAATCTGAATAGCCTCCAAGTCCCAGAGATGAGTCCTGGAGCTGAAGTATGTTTAACTGAGAATAGTTATAAAGATGAGTTGGCATTTGATCATGAAAGAAGTATTCCAACAGAACCTACCAGTGATAGTAACTTAAGCCCTGATCATGGAAAATGTATTTCAACAAGTTCTGTCAGTGATCGTAACTCAGGTTCTGAGCAGCATTTGATATCTTTTGACGAATGTCCAGCTAAGGAGAGACAACCACAAATGCCTGATTATTCTGATTCGGAAAGGAATACTTCACCAGATTCTCATCCGGATGTCTCTGTGGACAAATTTAATCAATTTGAAGAACCTAGATGCCATCCAACAAGGCTGTTATCAACGAGAACAACAATTTCCCCAACATCGCAGGAAAGATTGTCCAAGGCTATGAAGTCTATGCGGTTACATGACAAAGAATGCAAAACATGTGGTGTCAAACCATATTTCAAGCAAAACAAGTATAGGGTTGGCACAGCTGAAGAGTGTGACCAGACGAAAAGAATGTATTCCGATATAGGTCAAGAGAAAAATATAAGGAAATCAAAGAAGAGAAGTTTCCATTCAGCGAGCACAACTAAAGTTCCTCAAGCTACTGTCCAAAATTGTTCAGAGAGTGCAATTGCATTCACACAAAGGCAAATGCAGGACATAGAATGTCTTGCTCTGAAACTTACTAATCAGTTAAAGTCAATGAAAGCAATTGTAGAAGACAGACTTCATGTTGAAGGCAACAAAGCTACAAGTTTCAAGTTTAACACAGATGAGGTGAGAACAGCCATTGCTGATGCCACAAAAGCAGAAACGCGTGCGAAGAAATGGCTTTTGATTATGTCAAGGGACTGCAACCGCTTTTGTAAAATAATGAATACAACCGAGCACAATTCCAATGCTTCTCCAACTGCAATCCAGAAGGTGAAGAGGAAGGTTACGTTTGCTGATGAAGCTGGTGGAAAGCTTTGTGAAGTTAGGTTGATCGAGGACGATGTCAATGCCGAGTCTTTTGCCGAAATGAGTCCAGAAAATTGTGAAACAGTCCAGAGCTGTGTTATTGCAGTGGGAATCAAGCACGACGCTCTTTCGCTTCTCTTCACCGGCGATCCATTGTCGGAGAAACTTATCGAAGAGTTCATCCACGCCTCTGTTCCTTCGCCTTCCTCTCCCCCGTATCCATTCGCCATGAATGGCTTGCTTTTAAGCCCCGATTTCTTTAATTTCTTCTTGATTTTTGATGTCTTTCTGACTGATGTGGACTTTTCCGTTGAAGGGACGGCGAAGAAATCCACCGGCGTTGACGGTGGTGGCGACGGTGGATTGGGGTAA 2910 42.03 MYVYCNSELLTFHSLSQFPARRIGAKLKPLSNISSLFAGLALDLPPSFFFHWSALLRLLPVDRATSPSFLNLAGGGSESLITGEALSWFNKGKNHTYLMELRSFGHLHYIHAIKGGVITKVLNINRGKPAAVFKKLTDIYGSLDDKAQESLQTRQSRDGLEENIPDGREFKVETQVLYAERKLFNDEPEVSDSGSKGDSDEQNSDLEVDSMTLKQIMEGCKKRKLSQLRSVDSSKEKLTCSRRELDHSNLLPDEDDSDLNVALSIWKSKLSKRRKLKTKCEESRISTSSQCVQTIRNSDPINSDQGLLPSGSDLPLPVDVKVETPETNVTEIQNTDYMIDEWSLFCDENINLCLSYEPVGPDDLNLDIGLTTSEKEAEYCLLNSACHECLEGNEPGTLQMVGESSTKLMNEDNLEVHGPHHSDFSASESMKGQHTPSYVSNYSMPEAIPLTKEQCSGTYISLNNSTTNGVVCQTNSEGMSEAFALTEEQCRDTYISEGEPFTHEATCLNNGEGFTHLHAMTNLNSLQVPEMSPGAEVCLTENSYKDELAFDHERSIPTEPTSDSNLSPDHGKCISTSSVSDRNSGSEQHLISFDECPAKERQPQMPDYSDSERNTSPDSHPDVSVDKFNQFEEPRCHPTRLLSTRTTISPTSQERLSKAMKSMRLHDKECKTCGVKPYFKQNKYRVGTAEECDQTKRMYSDIGQEKNIRKSKKRSFHSASTTKVPQATVQNCSESAIAFTQRQMQDIECLALKLTNQLKSMKAIVEDRLHVEGNKATSFKFNTDEVRTAIADATKAETRAKKWLLIMSRDCNRFCKIMNTTEHNSNASPTAIQKVKRKVTFADEAGGKLCEVRLIEDDVNAESFAEMSPENCETVQSCVIAVGIKHDALSLLFTGDPLSEKLIEEFIHASVPSPSSPPYPFAMNGLLLSPDFFNFFLIFDVFLTDVDFSVEGTAKKSTGVDGGGDGGLG 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22325857 22335431 - Lsi08G014070.1 Lsi08g01407 669333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01407 969 MobiDBLite consensus disorder prediction 559 590 - -
Lsi08g01407 969 MobiDBLite consensus disorder prediction 555 624 - -
Lsi08g01407 969 MobiDBLite consensus disorder prediction 186 205 - -
Lsi08g01407 969 PANTHER EXPRESSED PROTEIN 99 866 - -
Lsi08g01407 969 PANTHER EXPRESSED PROTEIN 99 866 - -
Lsi08g01407 969 MobiDBLite consensus disorder prediction 186 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01407 - - - bhj:120076846 1304.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g925 . . . . . . . . Cmo05g00238 . . . . Car12g00454 Sed11g1023 . Cpe07g00432 Bhi04g00263 Tan02g1945 Cmetu03g0909 . Hepe10g0655 . Lcy13g1998 Cla08g01502 Cam08g1992 Cec08g1567 Cco08g1704 Clacu08g1682 . Cre08g1465 . Cone7ag1815 . . . . . Cme03g01969 Blo17g00806 . Bda08g01290 . . . . Bma05g00112 . . . Cma12g00481 Cma05g00230 Car05g00191 . Cpe11g00191 . . . . . . . . . . . . . . . Lsi08g01407 Csa02g02038 Chy03g01474 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008634 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34