Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01410 ATGGTATCAGCAGAGAATAATTCTCAATCGTCGACGGTTGTGGCATCTTCCTCGCCGGGAGTTGAAATCGAGATCATCGACTCCGTGATTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTGATAGCTCTGTCGCCAAAATCGCTTCTAGCAACGAACCGATTCATATGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGCGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTCTACGTCTGTCCGGAGCCTTCTTGCGTACATCACAATCCGGCTAGGGCACTGGGCGACCTAACTGGCATTAAAAAACACTTCTCCAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGATGCTCGAAAAAATATGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGCGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACGCATCGGGCTTTTTGCGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATCGCCGCTGCCGCCGCTGCGGTTGCTTCTTCGCCATTGACCACCGTGCCGCTGTCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGGCCTCCGCCATTAACACCGGCAGGGACAAGCTTAACCTCGGCCGTGGCCTCCAACGTTAACAAAACCAATCCGACAAACGGTGGTGGCACAAGCGTTTTCGCGGGTGTATTTGCCTCTTCTCCTCCCATTGTTACCAGTGCTGCCGCAAATCCGTCCCATCAACTCACCGCCGCCGTCAGCCGATCAGAAAGTGGCAATGAACCGCCAACCACCGCTATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCGGCCTCATCAGGCTCAACCTCAGCCTCTTCCATTTTTCATGACCATCCTCCACATTACTCGCCGTCGCCCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCTCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTACTGCGTGCCTCCGGGCTCTCACTGTCACCGTCTCCCGGCCCCGCCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAACGAGCCCACCACACGGGATCTCCTAGGACTGGGCATGAGCGGCGGCGGCGGGGGAGGAGGTGGTGGTGTTTCCGGCGGTGGTCTTTCTGCTCTTTTCACTTCCTTTGATGGCTGTGACGTTGAAACTGCTTCGCCTTACGGCAGCGGCGGGACTAATGGGTTATGA 1371 55.58 MVSAENNSQSSTVVASSSPGVEIEIIDSVIPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVIAAAAAAVASSPLTTVPLSPALSIQSSEAPDIPMGPPPLTPAGTSLTSAVASNVNKTNPTNGGGTSVFAGVFASSPPIVTSAAANPSHQLTAAVSRSESGNEPPTTAIEPTSLSLSTSLFLSCRASASSGSTSASSIFHDHPPHYSPSPQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPAISMTAGLGLGFGNEPTTRDLLGLGMSGGGGGGGGGVSGGGLSALFTSFDGCDVETASPYGSGGTNGL 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22345397 22350650 + Lsi08G014100.1 Lsi08g01410 669336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01410 456 MobiDBLite consensus disorder prediction 287 309 - -
Lsi08g01410 456 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 436 - -
Lsi08g01410 456 MobiDBLite consensus disorder prediction 329 351 - -
Lsi08g01410 456 SMART c2h2final6 138 158 IPR013087 -
Lsi08g01410 456 SMART c2h2final6 103 133 IPR013087 -
Lsi08g01410 456 SMART c2h2final6 62 84 IPR013087 -
Lsi08g01410 456 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 436 - -
Lsi08g01410 456 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lsi08g01410 456 Gene3D Classic Zinc Finger 60 159 - -
Lsi08g01410 456 SUPERFAMILY beta-beta-alpha zinc fingers 60 85 IPR036236 -
Lsi08g01410 456 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
Lsi08g01410 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00216 Lsi-Chr7:2309547 Lsi08g01410 Lsi-Chr8:22345397 1.38E-118 dispersed
Lsi08g01410 Lsi-Chr8:22345397 Lsi10g00083 Lsi-Chr10:1365870 6.68E-106 dispersed
Lsi01g00775 Lsi-Chr1:6094477 Lsi08g01410 Lsi-Chr8:22345397 1.17E-30 transposed
Lsi02g00015 Lsi-Chr2:219800 Lsi08g01410 Lsi-Chr8:22345397 6.02E-75 transposed
Lsi02g00257 Lsi-Chr2:2194024 Lsi08g01410 Lsi-Chr8:22345397 1.38E-73 transposed
Lsi02g01944 Lsi-Chr2:25337855 Lsi08g01410 Lsi-Chr8:22345397 3.23E-26 transposed
Lsi03g00054 Lsi-Chr3:850153 Lsi08g01410 Lsi-Chr8:22345397 5.41E-25 transposed
Lsi01g00694 Lsi-Chr1:5544880 Lsi08g01410 Lsi-Chr8:22345397 2.68E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25815 PF12171 zf-C2H2_jaz 6.50E-05 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01410 K25869 - cmo:103487955 733.791