Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g01414 | ATGACCTCCGACGGCGCCACTTCTGCCTCCAATTGCCGGCGGAAGCCGTCTTGGAGGGAGCGGGAGAATAATCGGACCAGAGAGCGTCGGAGGAGAGCCATTGCAGCTAAGATTTACTCCGGCCTCAGGGCTCAGGGAAACTTCAATTTGCCTAAACACTGTGACAATAACGAGGTCCTTAAAGCCCTTTGTGCTGAAGCTGGTTGGACCGTCGAAGATGACGGAACTACTTATCGGAAGGGATGCAAGCCGCCCCCAATTGATATTGTTGGCACTTCAACCAAAATCACCCCTTATTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCCAGTCCTATGGGATCCTACCAAGTCAGTCCCTCATCCTCCTCCTTCCCGAGCCCGTCCCGTTTCGACGCCAACAATCCGTCGAACCTCATTCCTTATCTTCGCCAAGCGATTCCCATATCGCTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGAACTCCACAGCCATTCCCCAATTGGGAAGTCACTGCTAAAGAATCCTTGTCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCTCCAGCTAGCCCGACTCGCCCTCAGCTCCATACTCCCACCACAATCCACAAATGTGACGAATCTGAATCATCTACCAATGAGTCCAGTCAATGGGCACTTCTCCGTGCCTATGCGCCTTCTGCATCAACAATGCCAACATCTCCCACGTTCAACCTTGTGAAACCTGCTGACCAGCATGTTCTGCACGGTGGTTTCATCAAAGAAAATGGAAGAGGAAACGAATTTGAGTTCTTGGGCTACAAGGTTAAGCCTTGGGAAGGGGAGAAGATCCACGACGTCGGATTGGAGGATTTAGAGCTCACACTCGGCAGCAGTAAGGCTCGAAGCTAA | 936 | 51.28 | MTSDGATSASNCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMGSYQVSPSSSSFPSPSRFDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPTTIHKCDESESSTNESSQWALLRAYAPSASTMPTSPTFNLVKPADQHVLHGGFIKENGRGNEFEFLGYKVKPWEGEKIHDVGLEDLELTLGSSKARS | 311 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 22379317 | 22381295 | - | Lsi08G014140.1 | Lsi08g01414 | 669340 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g01414 | 311 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - | |
| Lsi08g01414 | 311 | MobiDBLite | consensus disorder prediction | 93 | 132 | - | - | |
| Lsi08g01414 | 311 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 1 | 310 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 | |
| Lsi08g01414 | 311 | MobiDBLite | consensus disorder prediction | 204 | 225 | - | - | |
| Lsi08g01414 | 311 | PANTHER | PROTEIN BRASSINAZOLE-RESISTANT 1 | 1 | 310 | - | - | |
| Lsi08g01414 | 311 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Lsi08g01414 | 311 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 13 | 136 | IPR008540 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi07g00285 | Lsi-Chr7:3072923 | Lsi08g01414 | Lsi-Chr8:22379317 | 2.30E-42 | dispersed | |
| Lsi07g00770 | Lsi-Chr7:8391546 | Lsi08g01414 | Lsi-Chr8:22379317 | 8.78E-11 | transposed | |
| Lsi09g01562 | Lsi-Chr9:23742072 | Lsi08g01414 | Lsi-Chr8:22379317 | 4.75E-09 | transposed | |
| Lsi01g00704 | Lsi-Chr1:5623250 | Lsi08g01414 | Lsi-Chr8:22379317 | 1.84E-94 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25816 | PF05687 | BES1_N | 3.90E-62 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g01414 | K14503 | - | csv:101219853 | 545.814 |