Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01414 ATGACCTCCGACGGCGCCACTTCTGCCTCCAATTGCCGGCGGAAGCCGTCTTGGAGGGAGCGGGAGAATAATCGGACCAGAGAGCGTCGGAGGAGAGCCATTGCAGCTAAGATTTACTCCGGCCTCAGGGCTCAGGGAAACTTCAATTTGCCTAAACACTGTGACAATAACGAGGTCCTTAAAGCCCTTTGTGCTGAAGCTGGTTGGACCGTCGAAGATGACGGAACTACTTATCGGAAGGGATGCAAGCCGCCCCCAATTGATATTGTTGGCACTTCAACCAAAATCACCCCTTATTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCCAGTCCTATGGGATCCTACCAAGTCAGTCCCTCATCCTCCTCCTTCCCGAGCCCGTCCCGTTTCGACGCCAACAATCCGTCGAACCTCATTCCTTATCTTCGCCAAGCGATTCCCATATCGCTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGAACTCCACAGCCATTCCCCAATTGGGAAGTCACTGCTAAAGAATCCTTGTCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCTCCAGCTAGCCCGACTCGCCCTCAGCTCCATACTCCCACCACAATCCACAAATGTGACGAATCTGAATCATCTACCAATGAGTCCAGTCAATGGGCACTTCTCCGTGCCTATGCGCCTTCTGCATCAACAATGCCAACATCTCCCACGTTCAACCTTGTGAAACCTGCTGACCAGCATGTTCTGCACGGTGGTTTCATCAAAGAAAATGGAAGAGGAAACGAATTTGAGTTCTTGGGCTACAAGGTTAAGCCTTGGGAAGGGGAGAAGATCCACGACGTCGGATTGGAGGATTTAGAGCTCACACTCGGCAGCAGTAAGGCTCGAAGCTAA 936 51.28 MTSDGATSASNCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMGSYQVSPSSSSFPSPSRFDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPTTIHKCDESESSTNESSQWALLRAYAPSASTMPTSPTFNLVKPADQHVLHGGFIKENGRGNEFEFLGYKVKPWEGEKIHDVGLEDLELTLGSSKARS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22379317 22381295 - Lsi08G014140.1 Lsi08g01414 669340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01414 311 MobiDBLite consensus disorder prediction 14 29 - -
Lsi08g01414 311 MobiDBLite consensus disorder prediction 93 132 - -
Lsi08g01414 311 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 310 IPR033264 GO:0003700|GO:0006351|GO:0009742
Lsi08g01414 311 MobiDBLite consensus disorder prediction 204 225 - -
Lsi08g01414 311 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 1 310 - -
Lsi08g01414 311 MobiDBLite consensus disorder prediction 1 29 - -
Lsi08g01414 311 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 136 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01414 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101219853 545.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00285 Lsi-Chr7:3072923 Lsi08g01414 Lsi-Chr8:22379317 2.30E-42 dispersed
Lsi07g00770 Lsi-Chr7:8391546 Lsi08g01414 Lsi-Chr8:22379317 8.78E-11 transposed
Lsi09g01562 Lsi-Chr9:23742072 Lsi08g01414 Lsi-Chr8:22379317 4.75E-09 transposed
Lsi01g00704 Lsi-Chr1:5623250 Lsi08g01414 Lsi-Chr8:22379317 1.84E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g898 Blo01g01552 . Bda01g00543 Bda03g00253 Bpe02g00402 Bpe04g00207 Bma04g00201 Bma01g02306 Cmo05g00234 Cmo12g00435 . . . Car12g00460 Sed10g1328 . Cpe07g00438 Bhi04g00271 Tan02g1938 Cmetu03g0632 . Hepe10g0663 . Lcy13g2004 Cla08g01510 Cam08g1999 Cec08g1575 Cco08g1711 Clacu08g1689 . Cre08g1472 Cone4ag1892 Cone7ag1804 . . . . . Cme03g01975 . . . . . . . . . . . Cma12g00489 . . . Cpe11g00187 . . . . . . . . . . . . . . . Lsi08g01414 Csa02g02032 Chy03g01481 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01414 . 1 310 BZR Transcription Factor Family AT1G75080 58.8 1.6e-88 323.2
Lsi01g00704 . 62 352 BZR Transcription Factor Family AT1G75080 59.1 4.7e-80 295.0
Lsi08g01414 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 4.7e-88 321.6
Lsi01g00704 . 62 351 BZR Transcription Factor Family AT1G19350 59.5 3.4e-78 288.9
Lsi01g00704 . 40 347 BZR Transcription Factor Family AT3G50750 58.0 5.3e-77 284.6
Lsi08g01414 . 1 310 BZR Transcription Factor Family AT3G50750 51.8 2.5e-63 239.2
Lsi07g00285 . 77 325 BZR Transcription Factor Family AT4G18890 54.2 1.6e-49 193.0
Lsi02g00836 . 133 380 BZR Transcription Factor Family AT4G18890 53.4 5.6e-47 184.5
Lsi07g00285 . 1 325 BZR Transcription Factor Family AT1G78700 73.1 4.7e-117 417.9
Lsi02g00836 . 1 380 BZR Transcription Factor Family AT1G78700 58.3 1.9e-94 342.8
Lsi01g00704 . 62 234 BZR Transcription Factor Family AT4G36780 79.1 3.8e-64 241.9
Lsi08g01414 . 33 204 BZR Transcription Factor Family AT4G36780 62.7 3.9e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007707 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25816 PF05687 BES1_N 3.90E-62 No_clan Lsi TF