Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01416 ATGACTCCTTCACCAGTCACCTCTTCGGCTATACTTGATTTCTTATCCACTGACAAGGAGACTTTTTCAGCATTACGAGGTATATTGAGCGGAGGCCCTTTTCCAGCAAATGTCTATGGTATAAATCCCTACCAGTTTAAACCTGAAAACCTACCAGGTGATGTTTGGTATTACGTTGAGCGCAATGGGAATGCCGACTCAAGTTTTGGTCCCTGGAAACCAAAGGGTGGAGATTGTAAACTGTATTCAGATTCTTCTTTCACTGGATGGAGAACAACTTATGAATATTATGAAGGTCAAGCACCTCATGAGTGTAAAACAGCCTGGGTTATGCAGAAGTACTGGATGAGTCAGACAGACCTGTGTGAAAACAGCAAGCAAAAGGAAACCAGCTCACTTTGCAAAGTCTTTCTTGGAGATGAACAATTTCAAAACCATGAAAAGATTCAGAAAATTGAAATCTCAATTATTCTCAATTCAGAACTCAACAACTTAAATCATCAGTTGGCTGTTCCAGATGGTTCGACTTCGAATAATATGGCAAATGGGTCCACAAGCAAGTCTGAGATGAGTGAAGATGACAAGATAGTAGAATTGGCAGTTGCAGGAAAACCCTTGGGTCGTCATTTAGAAGAGATCCTTCCTGAGAGGGATGATTTTTCTGAAGGCGACTACTTGGAGTTGCTGGATTTAGATAACCCAACATCTCCATCATCAAGTTCTGAAAATTCTAGTTGCTTGACTATGTCATCGGATGACGACTTTGATATGATGGATGTACTACGTGACGCAGAACGTGACATTAACCATGACAGGGCACAAAGAGATGCTGCCTGCATCCGTTCCTCTGCGCCCTCCAGAATAAAGAAGGAGGTGGTGCATCAAGGGGCTTCAGAATCTCTTGTGAGCATCAGAAGAAGCCACTTGCCAGCAAAAGAGAATCTCAAAACCGATTCTACATTATCCAGTTCAGGGCGCATAGAACCAGACTTGAAACTTCCTAGCCAAAGTGAGAAAGAAGGCTACAGATTGAAAGTTGCATCAAGTTCTCACAACAAACTGCTCTCAAATGGTCAAGAAACAGCTGCGGATGGAGGTAAGAAGAAAAAGAAGAAGGCAGTTGGCAGCAGAATGAAGAAGATTCAGAAAAACGAATTGAAGGACATGCGAGGCAACTTCAGGAATGGGCTGGTTGAATTGCAGTGGGCTGGGCCGACCCAAACCTACCAAAGCCCATAA 1239 43.1 MTPSPVTSSAILDFLSTDKETFSALRGILSGGPFPANVYGINPYQFKPENLPGDVWYYVERNGNADSSFGPWKPKGGDCKLYSDSSFTGWRTTYEYYEGQAPHECKTAWVMQKYWMSQTDLCENSKQKETSSLCKVFLGDEQFQNHEKIQKIEISIILNSELNNLNHQLAVPDGSTSNNMANGSTSKSEMSEDDKIVELAVAGKPLGRHLEEILPERDDFSEGDYLELLDLDNPTSPSSSSENSSCLTMSSDDDFDMMDVLRDAERDINHDRAQRDAACIRSSAPSRIKKEVVHQGASESLVSIRRSHLPAKENLKTDSTLSSSGRIEPDLKLPSQSEKEGYRLKVASSSHNKLLSNGQETAADGGKKKKKKAVGSRMKKIQKNELKDMRGNFRNGLVELQWAGPTQTYQSP 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22399003 22404944 + Lsi08G014160.1 Lsi08g01416 669342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01416 412 MobiDBLite consensus disorder prediction 228 251 - -
Lsi08g01416 412 Gene3D NAC domain 17 143 IPR036093 GO:0003677|GO:0006355
Lsi08g01416 412 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 375 - -
Lsi08g01416 412 MobiDBLite consensus disorder prediction 232 251 - -
Lsi08g01416 412 Pfam No apical meristem (NAM) protein 14 114 IPR003441 GO:0003677|GO:0006355
Lsi08g01416 412 ProSiteProfiles NAC domain profile. 8 139 IPR003441 GO:0003677|GO:0006355
Lsi08g01416 412 MobiDBLite consensus disorder prediction 313 380 - -
Lsi08g01416 412 PANTHER NO APICAL MERISTEM PROTEIN, EXPRESSED 12 375 - -
Lsi08g01416 412 MobiDBLite consensus disorder prediction 171 187 - -
Lsi08g01416 412 MobiDBLite consensus disorder prediction 171 192 - -
Lsi08g01416 412 MobiDBLite consensus disorder prediction 314 330 - -
Lsi08g01416 412 SUPERFAMILY NAC domain 13 138 IPR036093 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01416 - - - csv:101220327 530.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01416 Lsi-Chr8:22399003 Lsi02g01909 Lsi-Chr2:25023892 3.21E-08 dispersed
Lsi08g01416 Lsi-Chr8:22399003 Lsi08g00681 Lsi-Chr8:15140205 7.53E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g894 . Blo12g00912 Bda01g00544 . Bpe02g00403 . . Bma01g02305 Cmo05g00232 Cmo12g00438 . . . Car12g00462 . . Cpe07g00440 Bhi04g00274 Tan02g1932 . . Hepe10g0668 . Lcy13g2006 Cla08g01512 Cam08g2001 Cec08g1577 Cco08g1713 Clacu08g1691 . Cre08g1474 . . Cone17ag1323 Cone20ag0153 . . . Cme03g01977 . . . . . . . . . . . Cma12g00491 Cma05g00225 Car05g00187 . Cpe11g00186 . . . . . . . . . . . . . . . Lsi08g01416 Csa02g02029 Chy03g01483 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003745 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 3 1 46