Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01417 ATGGCGAGCTGTGGGGACAGTAGTGAGGAAGAGCTCTCAGTGCTTCCTCGCCATACCAAGGTCGTCGTTACTGGAAACAATCGTACCAAATCCGTCCTCGTTGGACTTCAAGGCGTTGTCAAGAAAGCCGTTGGCCTTGGCGGGTGGCATTGGCTGGTTCTAACAAATGGTATAGAGGTGAAACTGCAGCGGAATGCGCTTAGTGTGATTGAGGCTCCGACGGGTAATGAGGAAGACGACGATCTCGAATTCGAGAACTTGCAATGGAATGGAATTGATATGGCATCTGATGACGCCCAAAAATCCCACAAATCAAGGCATAAATTACACAAATCATCTGGGTCATCTCACAAGACTATGAGCAGATCCCTTTCCTGTGACTCACAGTCGAAGAGCTCGGTTTCTGCACCGCAAGGATCCACGGTAGATGCCATTCCGAACCCGTCGAAAGAGCAATTGGTAGACCTAGTTCAGAGGCATTTCATGTCACAGCAACTGGATGAGTTGCAGGTCATAATGGGTTTTGTGAAGGCTGCAAAGAGGCTGAAGACAGTGTGCAAATGA 564 48.94 MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTVDAIPNPSKEQLVDLVQRHFMSQQLDELQVIMGFVKAAKRLKTVCK 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22413436 22416170 + Lsi08G014170.1 Lsi08g01417 669343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01417 187 PANTHER SAP30 3 140 IPR024145 -
Lsi08g01417 187 PANTHER SAP30 142 187 IPR024145 -
Lsi08g01417 187 MobiDBLite consensus disorder prediction 116 147 - -
Lsi08g01417 187 MobiDBLite consensus disorder prediction 97 147 - -
Lsi08g01417 187 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 145 180 IPR025718 GO:0005515
Lsi08g01417 187 PANTHER - 3 140 - -
Lsi08g01417 187 PANTHER - 142 187 - -
Lsi08g01417 187 Gene3D - 140 187 IPR038291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01417 - - - csv:101220556 327.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01640 Lsi08g01417 CCT
Lsi04g01640 Lsi08g01417 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00273 Lsi-Chr7:2962333 Lsi08g01417 Lsi-Chr8:22413436 2.10E-44 dispersed
Lsi04g01640 Lsi-Chr4:23877254 Lsi08g01417 Lsi-Chr8:22413436 2.54E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g893 . . Bda01g00545 Bda03g00252 Bpe02g00404 Bpe04g00205 Bma04g00200 Bma01g02304 Cmo05g00231 Cmo12g00439 Cma01g01889 Cma09g00173 Car01g01473 Car12g00463 Sed11g1009 Cpe06g00123 Cpe07g00441 Bhi04g00276 Tan02g1929 Cmetu03g0326 . Hepe10g0669 . Lcy13g2008 Cla08g01513 Cam08g2002 Cec08g1579 Cco08g1714 Clacu08g1692 . Cre08g1475 Cone4ag1891 Cone7ag1803 Cone17ag1322 Cone20ag0154 Lsi04g01640 Csa03g04183 Chy04g00534 Cme03g01978 Blo17g00813 . Bda08g01298 . . Bpe05g00078 . Bma05g00108 . Cmo01g01952 Cmo09g00170 Cma12g00492 Cma05g00224 Car05g00186 Car09g00155 Cpe11g00185 Cpe02g00143 . . . . . . . Cla05g01962 Cam05g2112 Cec05g2123 Cco05g2176 Clacu05g2101 Cmu05g1977 Cre05g2096 Lsi08g01417 Csa02g02027 Chy03g01484 Cme04g00614
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001291 3 3 1 3 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 2 76