Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01419 ATGGCTTCCCCATCAAGTGTTTTTCTTCTGTTAGTTGTGTTTTCTCTTGGTAATGCTGGTGGTTTAGTGTTCTCTGTTCTTGTTTTCACCTTTGATCAACTGGGAAATATAGCTTTTGCGACTGTTTTTACGCTTCAGAATCATTGCAGCTATACACTATGGCCGGGAACGCTCTCCGGCAATGGTGCGGCGGTTCTTGGCGACGGCGGTTTCCCTCTAGCACCCGGTGCGTCGGTGCAATTGACTGCTCCACCGGGCTGGTCCGGGCGGTTCTGGGCACGAACCGGCTGCGACTTCGACGGCTCTGGCAATGGGAAATGCCAGACGGGTGACTGCGGCGGCACGCTTAAATGCACCGGCGGAGGCGTGCCGCCGGTCACGCTGGCGGAGTTCACTATCGGCTCAACCAGTGGCGATATGGATTTCTACGACATTAGCCTCGTCGACGGCTACAATGTGGGTATTGGCGTCCGCGCAAGCGGCGGCACCGGCGATTGTCAGTATGCCGGCTGCGTCGCGGATGTGAACGGAATCTGCCCGTCGGAATTGCAAGTGACCAATTCGGGCTCCGTCGTGGCCTGCAAGAGCGCTTGCGCCGCCTTCAATACGCCGGAATTTTGCTGCACCGATGACCACTCGACGCCGCAGACATGCCCGCCGACGCCCTACTCAGAGATGTTCAAGAACGCCTGTCCGGCGGCGTACAGCTATGCATACGACGACGCTTCGAGCACGTGCACATGTGCCGGGTCGGACTATTTGATTAGTTTTTGCCCGTCGGGTTGA 786 57.38 MASPSSVFLLLVVFSLGNAGGLVFSVLVFTFDQLGNIAFATVFTLQNHCSYTLWPGTLSGNGAAVLGDGGFPLAPGASVQLTAPPGWSGRFWARTGCDFDGSGNGKCQTGDCGGTLKCTGGGVPPVTLAEFTIGSTSGDMDFYDISLVDGYNVGIGVRASGGTGDCQYAGCVADVNGICPSELQVTNSGSVVACKSACAAFNTPEFCCTDDHSTPQTCPPTPYSEMFKNACPAAYSYAYDDASSTCTCAGSDYLISFCPSG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22439427 22440466 - Lsi08G014190.1 Lsi08g01419 669345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01419 261 Pfam Thaumatin family 47 259 IPR001938 -
Lsi08g01419 261 SUPERFAMILY Osmotin, thaumatin-like protein 42 260 IPR037176 -
Lsi08g01419 261 CDD TLP-PA 42 258 - -
Lsi08g01419 261 PRINTS Pathogenesis-related protein signature 103 132 IPR001938 -
Lsi08g01419 261 PRINTS Pathogenesis-related protein signature 249 258 IPR001938 -
Lsi08g01419 261 PRINTS Pathogenesis-related protein signature 90 101 IPR001938 -
Lsi08g01419 261 PRINTS Pathogenesis-related protein signature 42 54 IPR001938 -
Lsi08g01419 261 PRINTS Pathogenesis-related protein signature 141 157 IPR001938 -
Lsi08g01419 261 PANTHER OS03G0233200 PROTEIN 37 259 IPR001938 -
Lsi08g01419 261 Gene3D Thaumatin 41 259 IPR037176 -
Lsi08g01419 261 ProSiteProfiles Thaumatin family profile. 40 261 IPR001938 -
Lsi08g01419 261 PANTHER PATHOGENESIS-RELATED PROTEIN 5 37 259 - -
Lsi08g01419 261 PIRSF PR5 11 261 IPR001938 -
Lsi08g01419 261 ProSitePatterns Thaumatin family signature. 103 118 IPR017949 -
Lsi08g01419 261 SMART tha2 43 259 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01419 - - - csv:101217945 466.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01419 Lsi-Chr8:22439427 Lsi10g00480 Lsi-Chr10:6929595 1.89E-81 dispersed
Lsi08g01419 Lsi-Chr8:22439427 Lsi07g01099 Lsi-Chr7:16390594 1.95E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g889 . . . . . . . . Cmo05g00228 . . . . . . . . Bhi04g00279 . . . Hepe10g0162 . . . . . . . . . . . . . . . . Cme03g01981 Blo17g00815 Blo18g00825 Bda08g01300 . . Bpe05g00077 Bma01g00772 Bma05g00106 . . . . Cma05g00222 Car05g00183 . Cpe11g00183 . . . . . . . . . . . . . . . Lsi08g01419 Csa02g02024 Chy03g01487 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012457 1 2 2 1 1 1 1 1 1 2 0 1 0 1 1 0 1 0 1 1 1 3 1 1 0 1 0 1 1 1 29