Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01421 ATGGCGAGCGGGTTTGGGGAATCTTCAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGCCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCAAAAAGTATTCCTGGAATCAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTACTACCCCTGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTCACGTTGTCTGCAGCTTTTGGTGGTCTTGTCCCATCGTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATATTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTTTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG 693 45.31 MASGFGESSSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGTTPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22453337 22454029 + Lsi08G014210.1 Lsi08g01421 669347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01421 230 SUPERFAMILY RING/U-box 26 83 - -
Lsi08g01421 230 MobiDBLite consensus disorder prediction 84 121 - -
Lsi08g01421 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Lsi08g01421 230 MobiDBLite consensus disorder prediction 1 20 - -
Lsi08g01421 230 CDD RING-HC_AtRMA_like 28 72 - -
Lsi08g01421 230 PANTHER OS12G0636000 PROTEIN 2 230 - -
Lsi08g01421 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lsi08g01421 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Lsi08g01421 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lsi08g01421 230 Pfam Zinc finger, C3HC4 type (RING finger) 29 70 - -
Lsi08g01421 230 SMART ring_2 30 70 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01421 Lsi-Chr8:22453337 Lsi10g00893 Lsi-Chr10:13198086 8.44E-30 dispersed
Lsi03g01745 Lsi-Chr3:28822855 Lsi08g01421 Lsi-Chr8:22453337 1.01E-30 transposed
Lsi01g01051 Lsi-Chr1:8701448 Lsi08g01421 Lsi-Chr8:22453337 8.66E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01421 K10666 - csv:101221027 464.922