Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01424 ATGGGTTGGCTAAGCAAAATTTTAAAAGTTGGATCTGGCCATAGAATAACTGAAAAGAATTACCAAACAAACTACGAGGAGGATCCGAATTCTCATCTGCCCTCGACTTCAGAGGGTTTATGGTCAGAGAACGAGAATGAAGACATTGATCGTGCAATAGCAATTTCTCTTGTAGAAGAAAGTCAGAAGGCAAATAATGTGAATGAAACTATTGTTCATGTTCCTGAGTCTAATTTACCAGAGAATATAGGATGCAGTATAGAGTCTGATATTTTAAGCAGTACTCATGTCCTAGATCGTGATTATCAATTGGAAGAAGATGAACTTCTTGCCAAAGCAGTACAAGAAAGCCTCAATTTGGATTCTCCTCCACAACATACAAGTGGAAACATGTATCAACCTTATCTACCTCAATTTCAATTTGGTTCCAGGATATGTGCTGGCTGCTATAATGAGATTGGCTATGGACGTTACTTGAACTGCCTCAATGCATTTTGGCATCCAGAATGTTTCCGTTGTCGCGCTTGCAACCTCCCAATTTCAGACTATGAGTTTTCTACTTCTGGGAATTTTCCATACCATAAATCTTGCTACAAGGAGAATTATCACCCAAAATGTGATGTTTGCAAGCACTTTTCAATTGGTGTTGGGATTTGGGATATGTGTCTCATGAACAGATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACACCCTTTCTGGATCCAGAAATACTGCCCGTCTCATGAATATGATGGCACTCCTCGATGTTGCAGTTGCGAACGAATGGAGGTCAGTGGCATCTCTTTAA 816 39.95 MGWLSKILKVGSGHRITEKNYQTNYEEDPNSHLPSTSEGLWSENENEDIDRAIAISLVEESQKANNVNETIVHVPESNLPENIGCSIESDILSSTHVLDRDYQLEEDELLAKAVQESLNLDSPPQHTSGNMYQPYLPQFQFGSRICAGCYNEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNFPYHKSCYKENYHPKCDVCKHFSIGVGIWDMCLMNRFQQILLVLLNIGHTLSGSRNTARLMNMMALLDVAVANEWRSVASL 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22473187 22478569 - Lsi08G014240.1 Lsi08g01424 669350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01424 271 Gene3D Cysteine Rich Protein 140 216 - -
Lsi08g01424 271 SMART uim 44 63 IPR003903 -
Lsi08g01424 271 SMART uim 105 124 IPR003903 -
Lsi08g01424 271 MobiDBLite consensus disorder prediction 20 41 - -
Lsi08g01424 271 PANTHER PROTEIN DA1 1 212 - -
Lsi08g01424 271 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Lsi08g01424 271 Pfam LIM domain 146 199 IPR001781 -
Lsi08g01424 271 CDD LIM_DA1 146 198 - -
Lsi08g01424 271 ProSitePatterns LIM zinc-binding domain signature. 146 180 IPR001781 -
Lsi08g01424 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 140 171 - -
Lsi08g01424 271 SMART lim_4 145 197 IPR001781 -
Lsi08g01424 271 PANTHER PROTEIN DA1-RELATED 2 1 212 IPR045218 -
Lsi08g01424 271 ProSiteProfiles LIM domain profile. 144 204 IPR001781 -
Lsi08g01424 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01424 - - - csv:101221261 372.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01424 Lsi-Chr8:22473187 Lsi10g00576 Lsi-Chr10:8390452 1.64E-15 dispersed
Lsi10g00575 Lsi-Chr10:8388587 Lsi08g01424 Lsi-Chr8:22473187 2.52E-06 transposed
Lsi01g01044 Lsi-Chr1:8655285 Lsi08g01424 Lsi-Chr8:22473187 6.73E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25817 PF00412 LIM 8.90E-08 CL0167 Lsi TR