Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01425 ATGGCGGCGACTAGATTCATGCAGCGACTTCGGCCAGCCTCCGCCGTGTCTTCCTCTTCCTCTTCTTCATCTCCGTCGTCGGCGATGACCGTGAGGTGTTTGGGCAAAACAGGGCTAAATTTGAACAACGGCGAACGGTTAATAACTTCTGGAGATGGCGAGAGAAGGCAGATAGTCGCCATGAAGGCGGCGGCGGCGGCGGCTCCCGAGACTGTGGAAACTAAAACCGAAGAATTGAATTTGGGTTCTTTGCTGGCGAATCTACTCGTTCAATTGAAGACTCCCGTGGGGAAGACGAAGATTCAGAAGCGACAGATTCAGAAGTTCATCGAAAAGATCATAATCGACTGTCGATTCTTCACATTGTTAGCCGTCGCCGGATCTTTACTGGGTTCAGTGCTCTGTTTTATTGAGGGGAGTTTCATTGTTGCAGAGTCATATCTGCAGTACTTTCATGGTCTTTCACAGAGCTCGGACCAAACTCATATGGTGGCGCTTCTAATTGAAGCCTTAGATATGTTCCTCGTCGGAACCGCTCTGGTTGTTTTTGGGGTCGGATTGTTTGCAATGTTCGTCGGATCGGAGAAGATGAAGGAAAAAAATCGGCCAGTGATTTCTGGGTCGAATTTGTTTGGTCTGTTCTACATGAAGAAAATTCCGACGTGGGTAGAAATGGAATCGATGTCGCAGGCGAAATCGAAGATCGGACATGCGGTGATGATGATACTGCAAGTGGGTGTGTTGGAAAAGTTCAAGAACATACCATTGAGCTCTGCCGTCGATCTCGCATGTTTCGCCGCCGCCGTTCTGATTTCCTCCGCCTCCATCTTCTTCCTCTCCAAACTCAACGTTGGGGGAGGCGGCAGCGTCGAGATCGAGATTAGGATTTTGAAGAAGCATCGCGGTTTAAAGTTTGAACTTCAAGGCAGTGGGACTGTAGATGCAGCTCTGAATTTGAAGCTTCGTTTGATTGTGCAGCACGTTGAAGCCCTTGAGATACTTCTTCAAGGTATCTGCGGCGTTCCTAGAGAAAGATTGAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAGCCTAGGTGCTGTGGCATCGGAGGTTCGGATCTTGTGCGACCTTGAGCAGGCTGAACCAACATGGACGGTTAAACATATTGGAGGGGCAATAAGAGGTGCAGGTGCTGAACAACTTTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGTCTATTCTATGCACTTGGCTATAAGTTAGATCATGAGCTGTTGAGAGTTGGTTTTGCTTTCCGCTTCCACCGGGGTGCCCACATAACAGTGACAGTTTCATCAGTTAATAAGATGTTAAAGCTACATTCAACTGATGAGGCTGTCCCTGTAACACCTGGTATACAGCTGGTCGAAGTGACAGCCCCAGCAACTTCTGATAACTATTCTGAAGTAGCTGGTGCAGTGTCGACTTTCTGTGAATATCTTGCACCGCTGCTGCATTTGTCAAAACCGGGAATATCGACAGGTGTTGTTCCTACTGCTGCTGCAGCTGCAGCATCTCTTCTATCTGATGGTGCAGGAACAACAATGTAG 1596 47.93 MAATRFMQRLRPASAVSSSSSSSSPSSAMTVRCLGKTGLNLNNGERLITSGDGERRQIVAMKAAAAAAPETVETKTEELNLGSLLANLLVQLKTPVGKTKIQKRQIQKFIEKIIIDCRFFTLLAVAGSLLGSVLCFIEGSFIVAESYLQYFHGLSQSSDQTHMVALLIEALDMFLVGTALVVFGVGLFAMFVGSEKMKEKNRPVISGSNLFGLFYMKKIPTWVEMESMSQAKSKIGHAVMMILQVGVLEKFKNIPLSSAVDLACFAAAVLISSASIFFLSKLNVGGGGSVEIEIRILKKHRGLKFELQGSGTVDAALNLKLRLIVQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQAEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCEYLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22480666 22486058 - Lsi08G014250.1 Lsi08g01425 669351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01425 531 Pfam Uncharacterized protein family, UPF0114 114 251 IPR005134 -
Lsi08g01425 531 MobiDBLite consensus disorder prediction 11 29 - -
Lsi08g01425 531 PANTHER EXPRESSED PROTEIN 1 285 - -
Lsi08g01425 531 Gene3D - 325 504 - -
Lsi08g01425 531 PANTHER OS06G0710300 PROTEIN 1 285 - -
Lsi08g01425 531 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01425 K15135 MED18; mediator of RNA polymerase II transcription subunit 18 - bhj:120075956 480.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01852 Lsi-Chr4:25649784 Lsi08g01425 Lsi-Chr8:22480666 1.28E-34 dispersed
Lsi08g01425 Lsi-Chr8:22480666 Lsi03g01195 Lsi-Chr3:22370855 9.09E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g867 . . . . . . . . . Cmo12g00444 . . . Car12g00469 . . Cpe07g00447 Bhi04g00289 . . . . . . Cla08g01522 Cam08g2014 Cec08g1589 Cco08g1724 Clacu08g1702 . Cre08g1484 . . . . . . . Cme03g01988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01425 Csa02g02017 Chy03g01494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011023 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31