Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01427 ATGATCTCAAAAACCCAAGTTCTAATTTCCTCTAATCTTTTTTTTCTTGTTCTAATTTTAACACTCAAAACAGAGGCTAAATGCTCTAAATCATGCAACTCCAACCAGATTCCTTACGATTTCCCCTACCCATTTGGCTTCTCCGCCGGCTGCCCAATCCGCCTGAACTGCAGCCACGACGGCGCCGCCATGATTGGAGAATTCCCTGTCGAGTTTATTAATTCCGATCACATCAAAGTAGTAATTAAAGCTAAATGCAACCGCCGATTCCACACAATCCGCCAATTCTTTAGCCCCCATTACGCCCCAACGGCCAACAACGCCGTTCTTTTACAAAACTGTTCCTCTCCGATTTCGACTTGCTTTTTACCGACGACGATGGTTCAGACCAAATTTGAATCCCCCGATTGCTCTGTTAATCGCACTAGTATAAGCTGTTACACCCAAAACGCCACCGATTCCGCCGGTTTCTTGGACTTCAAAAACCTCACCGGAACCCACTGCGATTACCTTCTGTCGTCGATTTCCGCGGAGGCGCTCAACAACAACACCTCTACCGGGATTTCTCTAGAAATTCAAACGGTGGATCTTGGATGGTGGCTGCAGGGGGGCTGCCACCTGTCCTGCCATGAAGATGCTAACTGTACGGAACTTAAATCGCCGAGTAATGGAATGTTGTCTCATCGTTGCCGCTGCCGGGATGGGTTGGTCGGCGATGGGTATTTGGCCGGCACCGGCTGCCGGAAAGCTTCAAATTGCTACACCACCAAGTACATTATCGGCGAATGCGGAACATCAACAACAGCAACAAGAACCGCCATCCTTATCGGAACCGTCATCGGCGGATCCGCCGTACTACTTTCTCTCGGTTTATTCTGCTGCTTCATCCATCGTCGTTCCAATCTCAAATCTATACACCTCAACACAATCACCAAACGCCGCCTCTCGGAAGCCACCGGCGGTGCTGGCAAATCCATCATCCACCTCTACACCTACAAAGAGATCCAAAAAGCCACCCACAACTTCTCCGACGACCACCGCCTCGGCACCGGCGCATACGCCACCGTCTACGCCGGAAAATTACGCAACGGCGAATGGGTTGCCATCAAACGCCTCAAGAATCGAGATCCCGACACCATCCAACAAGTCCTGAACGAAATCAACCTCATCTCCTCCGTTAGCCACCCTAACCTCGTCCGCCTCCTCGGCTGCTCCATGGAATCGGGCGACCAAATCCTGGTTTACGAATTCATGCCCAACGGCACTCTGTCTCAACATTTACAGAAACAGAGAGGCACCGGCCTCCCCTGGCTCGTCCGCCTCGACATCGCCGTCGAAACTGCTAACGCAATCGCCCATCTACATTCTGCAATTAACCCTCCGATATTCCACAGAGACATCAAATCCAGCAACATACTACTCGATCAGAATCTCAAATCGAAAGTAGCGGATTTCGGGCTTTCAAGATTGGGGATGGCCGAAATTTCCCATATCTCGACGGCCCCTCAAGGGACACCGGGGTATCTCGATCCGCAATACCATCAAGATTTTCATCTCTCGGACAAGAGCGACGTGTACAGCTTCGGCGTGGTCCTCGTGGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGTCGAAAGAGGAGGTAAATTTGGCCACTCTGGCCGCCGATCGGATCGGGAATGGGCGGCTGAGTGAAATTGTGGACCCGTTGATGGAGACGGAGGGAGATGAATGGGGAATTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCTTGGCGTTTGATAGGGATGTAAGACCGTCGATGGTGGAGGTGGCGGCGGAGCTGGAGGAGATCCGGCGGAGCAGGTGGGAAGAAAAGGGATTGAAGTGTAATGAAATGGAATTAGTAGTTGAAAGTGGGAGCTCGAAGTCTAGCCATGGAGGAGGGGATTACTTTTCAAGAGGCTCTGTTGAAGATTCATGGCGGAGTGAACAGAGCTCGCCGTCATCCAGTAGTTTACTAAATAATGTCCTTTTATGA 2037 51.1 MISKTQVLISSNLFFLVLILTLKTEAKCSKSCNSNQIPYDFPYPFGFSAGCPIRLNCSHDGAAMIGEFPVEFINSDHIKVVIKAKCNRRFHTIRQFFSPHYAPTANNAVLLQNCSSPISTCFLPTTMVQTKFESPDCSVNRTSISCYTQNATDSAGFLDFKNLTGTHCDYLLSSISAEALNNNTSTGISLEIQTVDLGWWLQGGCHLSCHEDANCTELKSPSNGMLSHRCRCRDGLVGDGYLAGTGCRKASNCYTTKYIIGECGTSTTATRTAILIGTVIGGSAVLLSLGLFCCFIHRRSNLKSIHLNTITKRRLSEATGGAGKSIIHLYTYKEIQKATHNFSDDHRLGTGAYATVYAGKLRNGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLSQHLQKQRGTGLPWLVRLDIAVETANAIAHLHSAINPPIFHRDIKSSNILLDQNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRSKEEVNLATLAADRIGNGRLSEIVDPLMETEGDEWGISSVEKVGEVAFRCLAFDRDVRPSMVEVAAELEEIRRSRWEEKGLKCNEMELVVESGSSKSSHGGGDYFSRGSVEDSWRSEQSSPSSSSLLNNVLL 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22501332 22510180 - Lsi08G014270.1 Lsi08g01427 669353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01427 678 CDD STKc_IRAK 348 617 - -
Lsi08g01427 678 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Lsi08g01427 678 ProSiteProfiles Protein kinase domain profile. 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01427 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 25 632 - -
Lsi08g01427 678 MobiDBLite consensus disorder prediction 657 678 - -
Lsi08g01427 678 Pfam Protein kinase domain 343 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01427 678 MobiDBLite consensus disorder prediction 638 678 - -
Lsi08g01427 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Lsi08g01427 678 SUPERFAMILY Protein kinase-like (PK-like) 325 615 IPR011009 -
Lsi08g01427 678 Gene3D Phosphorylase Kinase; domain 1 316 417 - -
Lsi08g01427 678 SMART serkin_6 342 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01427 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 632 IPR045274 GO:0007166
Lsi08g01427 678 Gene3D Transferase(Phosphotransferase) domain 1 418 642 - -
Lsi08g01427 678 Gene3D Laminin 207 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01427 - - - csv:101218893 1214.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00487 Lsi-Chr4:4513122 Lsi08g01427 Lsi-Chr8:22501332 7.73E-78 dispersed
Lsi08g01427 Lsi-Chr8:22501332 Lsi01g01453 Lsi-Chr1:12657490 6.81E-85 dispersed
Lsi09g01708 Lsi-Chr9:25639847 Lsi08g01427 Lsi-Chr8:22501332 5.03E-50 transposed
Lsi01g01032 Lsi-Chr1:8536655 Lsi08g01427 Lsi-Chr8:22501332 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83860 PF00069 Pkinase 4.30E-41 CL0016 Lsi PK