Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01429 ATGTTTTCCTCCACCACCCATTGGAATAATTTCATCATGGATTACACCACCACCACCACCAACCCACCGCCGCCGCCATTGCCGGACCTTTCCTTGCACATAAGTCCACCCTCGGATTCCGGCAATCAATATTTGAAAAACCACCAACCTCAAATGTATGGAAGCCATTTGAAGAGAGGGCCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACCACTACTCTTCATGCCCATTTCGTTCATGCTGTTCAGCTCCTTGGCGGCCATGAAAGGCTCATGCAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGGCATGAAGAACCAATTAAGGCAAGAAATTGAAGCAAGTGGTGTTTCAAATTGTGAGAATTCTAGTAATCCTCCACTTACAATGTGGACAACCCCTACTCAAAAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGCAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATATTAACTTAGATTTCACTTTAGGATGCCCTAATTCTCTAACAAGCCATTCTAATCCTCACTCTTCATCTACTGAACTTCCTCTTCTCAAATGCTAA 723 41.63 MFSSTTHWNNFIMDYTTTTTNPPPPPLPDLSLHISPPSDSGNQYLKNHQPQMYGSHLKRGPKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERLMQMYRTVKSTDKATDSGMKNQLRQEIEASGVSNCENSSNPPLTMWTTPTQKMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQQQEKDRHNGNANMKISSGVKKQNNNNNNINLDFTLGCPNSLTSHSNPHSSSTELPLLKC 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22526881 22531487 - Lsi08G014290.1 Lsi08g01429 669355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01429 240 Gene3D - 73 171 - -
Lsi08g01429 240 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 46 98 - -
Lsi08g01429 240 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 46 98 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lsi08g01429 240 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 100 218 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lsi08g01429 240 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 100 218 - -
Lsi08g01429 240 MobiDBLite consensus disorder prediction 177 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01429 - - - csv:101219131 347.821
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01607 Lsi08g01429 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00266 Lsi-Chr5:3370938 Lsi08g01429 Lsi-Chr8:22526881 1.03E-10 dispersed
Lsi08g01429 Lsi-Chr8:22526881 Lsi09g00912 Lsi-Chr9:11144609 1.25E-12 dispersed
Lsi04g01607 Lsi-Chr4:23586496 Lsi08g01429 Lsi-Chr8:22526881 3.77E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29