Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01433 ATGGCTATTCGTGTTACTCTCTCCTACTCTGGCTATGTCGCCCAAAACCTAGCCTCCTCCACCGGCCTTCGGGCCGGTAACTGCCGCGTCTTTCAGGAGTTTTGGGTCCGATCTTGTGTTTTTGGATCGACCCATAATCCGGAGCTCAAATCTGCTGGAAGCGCGCGCAATTATCGGTCCGATAGCCGGCGGTTCAAGCCGGGTGGCTCTATTGAGAAGCCAACTTCTATGTACAGCACTCTCGCCGGAGAAAGGGTTGGGGAAAGCCCTAAAAACCCCATGGTTTTGGGTTTGATGTCGATGTTAAAATCGATGGCTGATTCTTCTGCGATCAGTACGGGGACTTTTGGGGTTTCTTCGTTTAAAGCCACTTCGATTATACCCTTTTTACAAGGATCGAAGTGGCTTCCGGGTTATGATATACGATCTCATGTAAGCGACGATGTGGATAAAGGCGGAACAACGGTTTGTTATGATTATAATGAAAGTGGGAGTAATCAGTTTTATGAGAATGATTTTGAGAAGAGCAGCTGGGTTTCGCGCTTGTTGAGTACTTATTCCGAGGACGCAAAGGCCCTCTTTACGGCTTTGACTGTTAGTGTGCTCTTTAAATCTTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTGTCCAACTCTGGAAGTAGGGGATCGTATTTTAGCAGAAAAGTTTTCAAGGTCGTGGAAGTTGCCTTACCCTGTTCCTAAACTGATCTCTATTGCTTTTCCTCCTTATACTAGGAAACCTGAAGTTTCAGATATAGTGATCTTCAAGGCTCCTCAAATCTTGCAGGAATTTGGAGTTAGTTCAAATGAGGTGTTTATTAAGAGAGTTGTGGCTACATCTGGGGACGTGGTTGCAGTTCAAAAAGGGAAATTGGTCGTAAATGGTGTAGTTCAAGATGAGGACTTTGTCTTAGAGCCAATTGCTTATGAGATGGAACCATTGCTTGTGCCTGAAGGTTATGTGTATGTAATGGGGGACAACCGTAACAATAGTTGTGATTCTCATGACTGGGGTCCACTCCCAATAGAAAATATTGTAGGTAGATCATTATTGAAGTATTGGCCTCCCTCCAAGGGATCCGGTATGGTAGATGAACCACGTGCAGGGAAGATTAATCTGGGGATTTCCTGA 1164 45.36 MAIRVTLSYSGYVAQNLASSTGLRAGNCRVFQEFWVRSCVFGSTHNPELKSAGSARNYRSDSRRFKPGGSIEKPTSMYSTLAGERVGESPKNPMVLGLMSMLKSMADSSAISTGTFGVSSFKATSIIPFLQGSKWLPGYDIRSHVSDDVDKGGTTVCYDYNESGSNQFYENDFEKSSWVSRLLSTYSEDAKALFTALTVSVLFKSFLAEPKSIPSSSMCPTLEVGDRILAEKFSRSWKLPYPVPKLISIAFPPYTRKPEVSDIVIFKAPQILQEFGVSSNEVFIKRVVATSGDVVAVQKGKLVVNGVVQDEDFVLEPIAYEMEPLLVPEGYVYVMGDNRNNSCDSHDWGPLPIENIVGRSLLKYWPPSKGSGMVDEPRAGKINLGIS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22562266 22568171 + Lsi08G014330.1 Lsi08g01433 669359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01433 387 ProSitePatterns Signal peptidases I signature 3. 332 345 IPR019758 GO:0004252|GO:0016021
Lsi08g01433 387 ProSitePatterns Signal peptidases I serine active site. 215 222 IPR019756 GO:0004252|GO:0016021
Lsi08g01433 387 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 240 - -
Lsi08g01433 387 Gene3D Umud Fragment, subunit A 203 379 - -
Lsi08g01433 387 SUPERFAMILY LexA/Signal peptidase 205 372 IPR036286 -
Lsi08g01433 387 TIGRFAM sigpep_I_bact: signal peptidase I 191 366 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lsi08g01433 387 Pfam Signal peptidase, peptidase S26 190 365 IPR019533 GO:0004252|GO:0006465
Lsi08g01433 387 MobiDBLite consensus disorder prediction 49 69 - -
Lsi08g01433 387 PANTHER SIGNAL PEPTIDASE I 1 240 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lsi08g01433 387 CDD S26_SPase_I 209 359 IPR019533 GO:0004252|GO:0006465
Lsi08g01433 387 PANTHER SIGNAL PEPTIDASE I 256 381 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lsi08g01433 387 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 256 381 - -
Lsi08g01433 387 PRINTS Bacterial leader peptidase 1 (S26A) family signature 327 346 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lsi08g01433 387 PRINTS Bacterial leader peptidase 1 (S26A) family signature 206 222 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lsi08g01433 387 PRINTS Bacterial leader peptidase 1 (S26A) family signature 283 295 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01433 K03100 lepB; signal peptidase I [EC:3.4.21.89] - csv:101222362 652.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01599 Lsi08g01433 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00866 Lsi-Chr6:18183428 Lsi08g01433 Lsi-Chr8:22562266 1.02E-45 dispersed
Lsi08g00458 Lsi-Chr8:12240350 Lsi08g01433 Lsi-Chr8:22562266 4.23E-32 dispersed
Lsi04g01599 Lsi-Chr4:23525241 Lsi08g01433 Lsi-Chr8:22562266 1.83E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g833 . . . . . . . . . Cmo12g00452 . Cma09g00203 . Car12g00481 Sed11g0987 Cpe06g00138 Cpe07g00455 Bhi04g00299 Tan02g1908 Cmetu03g1436 . Hepe10g0694 . Lcy13g2022 Cla08g01531 Cam08g2024 Cec08g1598 Cco08g1734 Clacu08g1712 . Cre08g1493 Cone4ag1550 Cone7ag1402 . . Lsi04g01599 Csa04g02369 . Cme03g01996 . . . Bda01g01456 . . . . Sed01g2628 . Cmo09g00197 Cma12g00511 . . Car09g00171 . . Bhi09g03385 Tan01g4845 Cmetu07g1797 . Hepe01g1727 . . Cla05g01999 Cam05g2150 Cec05g2167 Cco05g2215 Clacu05g2142 Cmu05g2012 Cre05g2138 Lsi08g01433 Csa02g02007 Chy07g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003030 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 2 2 1 2 2 2 2 3 2 1 3 4 1 53