Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01434 ATGGCATTTGTGTCGATGGCGCTGAGCCTTGTGACGTATTTCAGTGGATATATGAACTTCAGCTTGACAAAATCGGTGACCACTCTCACCAATTTCATGGGAACCACGTTTCTTCTCACACTCGTCGGCGGTTTCGTCTCCGAAACTTATCTCTCAAGATTCAAGACTTGCGTCCTCTTCGCTTCCTTTGAGTTCATGGCACATTTCCCGCACCTAAGGCCGGCACCGTGCAAAGGAGCGGCGGCGGGCAGCAAGTGCGAGGCGGCGGACAGGGGTCAGGAGGCGATTCTTTACGTGGGAATATACCTGATAGCGCTGGGAGCGAGTGGCGTGAAAGTGGCGCTGCCAGCATTGGGGGCGGATCAATTCGACGACAGAGATCCAGTGGAGGCGGCGAAGCTGTCGAGCTTTTTCAACTGGTTCCTGTTCAGTCTGACGATAGGATCGATGGTGGGAGTGACATTGATAGCGTGGATAAACACAGCGGTGGGTTGGGACTTGGCGTTTGTGGTTTGTAGCATTGCACTTCTTGCTGCCATTGTTGTTGTGCTTGCAGGCAAGTCGTTTTATCGCAATAATGTGCCTATTGGAAGCCCCGTTCTCAGACTTCTTCAGGTCTTTGTAGCTTCAATCCGAAACAGGAAACTTCCACTTCCAGAGAATGTTAATGAACTACATGAGATTCGTGACAAAGAAGCTGCAATCCCATATGAAATCCTCGAGAAAACTGATCAATTCAGATTCTTAGACAGAGCAGCCATTATAAGGAATGATACAAGTGCATCAATGTCAGCAAATCAGCTAGGACCATGGAGACTCTGCACAGTGACACAGGTTGAAGAAACAAAGATTCTAATCAGAATGCTCCCAATTATACTAAGCACCATCTTCATGGCCACCTGCATGGCTCAACTCCAAACATTCTCCATTCAACAAAGCATAACCATGGATTGCCATTTCCTGGGATTCAAAATTCCAGGCCCCTCTGTCCCCGTCATTCCCTTGCTTTTCATGTTCTTCTTTATCCCCTTTTATGAGCGTATTTTCGTTCCCCTTGCTCGTAAAATTACCGGGATTCCCACAGGAATTCGGCACCTCCAGAGGATTGGCATTGGACTGGTACTCACTGCTGCATCAATGGCCATTGCAGGGGTCGTGGAGACTCGCCGCAAAAATGTTGCAATCAAACACAATATGGTGGATAGTGTGGAGCCTTTGCCGATGAGCGTTTTCTGGTTGGGATTTCAGTTTTGCATATTTGGAATGGGCGATATATTCACTCTTGTAGGACTGCTGGAATTCTTTTATGCAGAAAGCTCAGCAGGGATGAAGTCATTGAGCACAGCCATCGCTTGGTGTTCGATTGCGTTTGGGTACTTCACAAGTACGGTAGTGGTGGAGGTGGTGAACAAGGCGAGCGGAGGATGGCTGGCAAGCAACAATCTCAACAGAGATAACTTGAACTATTTCTACTGGTTACTGTCAGTGTTGAGCGTGCTGAATTTTGGGTTTTATTTGGTTTGTGCTTCTTGGTATAGGTATAAGAATGTTGAGGTCCTTTGA 1563 47.54 MAFVSMALSLVTYFSGYMNFSLTKSVTTLTNFMGTTFLLTLVGGFVSETYLSRFKTCVLFASFEFMAHFPHLRPAPCKGAAAGSKCEAADRGQEAILYVGIYLIALGASGVKVALPALGADQFDDRDPVEAAKLSSFFNWFLFSLTIGSMVGVTLIAWINTAVGWDLAFVVCSIALLAAIVVVLAGKSFYRNNVPIGSPVLRLLQVFVASIRNRKLPLPENVNELHEIRDKEAAIPYEILEKTDQFRFLDRAAIIRNDTSASMSANQLGPWRLCTVTQVEETKILIRMLPIILSTIFMATCMAQLQTFSIQQSITMDCHFLGFKIPGPSVPVIPLLFMFFFIPFYERIFVPLARKITGIPTGIRHLQRIGIGLVLTAASMAIAGVVETRRKNVAIKHNMVDSVEPLPMSVFWLGFQFCIFGMGDIFTLVGLLEFFYAESSAGMKSLSTAIAWCSIAFGYFTSTVVVEVVNKASGGWLASNNLNRDNLNYFYWLLSVLSVLNFGFYLVCASWYRYKNVEVL 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22566846 22570745 - Lsi08G014340.1 Lsi08g01434 669360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01434 520 Pfam POT family 68 473 IPR000109 GO:0016020|GO:0022857|GO:0055085
Lsi08g01434 520 SUPERFAMILY MFS general substrate transporter 4 515 IPR036259 -
Lsi08g01434 520 Gene3D MFS general substrate transporter like domains 1 519 IPR036259 -
Lsi08g01434 520 PANTHER PROTEIN NRT1/ PTR FAMILY 4.5-LIKE 1 517 - -
Lsi08g01434 520 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1 517 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01434 K14638 SLC15A3_4, PHT; solute carrier family 15 (peptide/histidine transporter), member 3/4 - csv:101219370 900.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00209 Lsi-Chr1:1948738 Lsi08g01434 Lsi-Chr8:22566846 0 dispersed
Lsi08g00179 Lsi-Chr8:3713964 Lsi08g01434 Lsi-Chr8:22566846 1.59E-122 dispersed
Lsi08g00747 Lsi-Chr8:15836019 Lsi08g01434 Lsi-Chr8:22566846 5.02E-132 dispersed
Lsi08g01434 Lsi-Chr8:22566846 Lsi11g00670 Lsi-Chr11:7059481 3.20E-147 dispersed
Lsi08g01434 Lsi-Chr8:22566846 Lsi04g00460 Lsi-Chr4:4361028 1.90E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g832 . . . . . . . . . Cmo12g00454 . . . Car12g00483 . . Cpe07g00456 Bhi04g00300 . . . . . Lcy13g2023 Cla08g01532 Cam08g2025 Cec08g1599 Cco08g1735 Clacu08g1713 . Cre08g1494 . . . Cone20ag0168 . . . Cme03g01997 . . . . . . . . . . . Cma12g00513 . . . . . . . . . . . . . . . . . . . Lsi08g01434 Csa02g02006 Chy03g01503 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007975 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 11 1 1 1 1 1 1 0 1 1 1 1 1 35