Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01440 ATGCCTTTCTTTCACAAAAGCGCTTCAAATTCTCGGCTTCAACAGAAGGCACCCGATTCTGAATTTTCCGTTGAACTACCGGAACCGCTTGTTCAGCGGCGGCTCACTAGACAGAGGAAGCTCCGGCATCTTACGGATAGAGACGTTGGCTTTGAACACCCCCGATCATTTCCCGATTCCCCCGATTTTTCGGCAAAACCTAGATCGCCTCTAGGGGGTTCCGAACGTTGGTCCTCGTCGGCTTCGCCCCAGCCTTTGCCTCTGCCGGAGTTCTCTCCGGTTCGGAGCCCGGAGTCCGGTTCTTGGAGTTCTGGTCAAGGACGTGTGGGATCACCTGTTGAAACTCGGGTCCGAAGTTTTGGCCACAATGAAAGGCGAGTTGCTATAGATTTGACCTTGGAAGTTGTTAATGGCAATTCAGGAGGGACTCGGGCTACCACATTTACAAGCCCTCAAAGTCTCTCTTTGAATTCAGGGAAATCAAATCCGAATAAGGAGTTTCTTTTTGGTTGTTTGGATCAGCCTCCAAACAACAAAGGCAGGGGATCCCCTACTTATCCGAATTTGACACCTAAGAATTCGTCGTCAAAGAGTGCGCCAACGAGCATTTTACCAAGTCCTGCTGTTAGCCCACGACAATCATATACTGGAAATCTTTTTGTTTCTGCTTTGACTCACCATGACTATCAGGAATCCCCTTCCAATAATTCTCCTAAAGCACCACCCCCTAAAACTGCACTTACTTCTCAACCTTCTCCTCTCCATAGCCCGACATTTCGAAGTTCCGTAAGCAATCCCAGATCTCCTAATGATATGACATTTCCCCTGCATTCTAAGTTACAAAAAGATAGTAGTATAGACCGGGCAGAAAGCCATGGCCATGTCAATGCCCATCCATTGCCCCTTCCTCCTCCGTTAATAGCCTCTTCACAATCTCTTCCGTCGAATATGCATCATCTTATTGAGAAGCCATACATTTCATCTATGAAAGGTCAATGGCAAAAAGGAAAGCTAATTGGGCGTGGTACATTTGGAAGTGTTTATCTTGCAACCAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCCGATGATCCTAAATCTGCTGAATGTATAAAGCAACTAGAGCAGATTGGTGATCACTTCTATATATATTTGGAGTATGTTTATCCTGGGTCAATAAATAAATATGTCCGTGAACGTTGTGGAGCCATTACAGAATCTATTGTTCGCAATTTCACCCGCCATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAAACAATTCACAGAGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCGGAGGTCATAAAAGCTGCTATGTTGAAAGATGCCAATCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGTGTGAGTTTGAAGGGCATCAAGCAATGTTCAAGGCGTTGAATAAAACCCCATCTATCCCAGAAAAGCTATCTCCAGAAGGGAAGGATTTCCTCCAGTGTTGCTTTCAGAGGAATCCAGCTGACAGACCAACAGCCATGGTGCTCCTTGACCATCCTTTCTTAAGATCCTCAAATGACTCAAATGTTTCAATCCCCACGTCAGCATTTTCGACAATGAACCTCTTGGAAAAATTGTTGAGTCCAAAGGACCCCCTTGATCCCAAAGGAGATCAGGCACAAAACTCTCCTGGAACTTCAGCTTCAAACGATTATTTGCCGTGCCGTAGCCCTTCAACTAACATTTCAAGCAATGTTCCTGCCAGTGCTGTTACCAATCATCACTTTTCGATTTCAAGAACTCATAAAAGGGAAGTGCCGCACCTCTGA 1980 45.25 MPFFHKSASNSRLQQKAPDSEFSVELPEPLVQRRLTRQRKLRHLTDRDVGFEHPRSFPDSPDFSAKPRSPLGGSERWSSSASPQPLPLPEFSPVRSPESGSWSSGQGRVGSPVETRVRSFGHNERRVAIDLTLEVVNGNSGGTRATTFTSPQSLSLNSGKSNPNKEFLFGCLDQPPNNKGRGSPTYPNLTPKNSSSKSAPTSILPSPAVSPRQSYTGNLFVSALTHHDYQESPSNNSPKAPPPKTALTSQPSPLHSPTFRSSVSNPRSPNDMTFPLHSKLQKDSSIDRAESHGHVNAHPLPLPPPLIASSQSLPSNMHHLIEKPYISSMKGQWQKGKLIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECIKQLEQIGDHFYIYLEYVYPGSINKYVRERCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAAMLKDANPDLALAVDIWSLGCTIIEMLNGKPPWCEFEGHQAMFKALNKTPSIPEKLSPEGKDFLQCCFQRNPADRPTAMVLLDHPFLRSSNDSNVSIPTSAFSTMNLLEKLLSPKDPLDPKGDQAQNSPGTSASNDYLPCRSPSTNISSNVPASAVTNHHFSISRTHKREVPHL 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22594837 22599313 + Lsi08G014400.1 Lsi08g01440 669366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01440 659 MobiDBLite consensus disorder prediction 96 110 - -
Lsi08g01440 659 MobiDBLite consensus disorder prediction 137 164 - -
Lsi08g01440 659 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 381 649 - -
Lsi08g01440 659 Gene3D Transferase(Phosphotransferase) domain 1 330 599 - -
Lsi08g01440 659 MobiDBLite consensus disorder prediction 249 276 - -
Lsi08g01440 659 MobiDBLite consensus disorder prediction 137 212 - -
Lsi08g01440 659 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 382 - -
Lsi08g01440 659 SUPERFAMILY Protein kinase-like (PK-like) 328 588 IPR011009 -
Lsi08g01440 659 Pfam Protein kinase domain 334 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01440 659 PANTHER - 381 649 - -
Lsi08g01440 659 PANTHER - 1 382 - -
Lsi08g01440 659 MobiDBLite consensus disorder prediction 598 637 - -
Lsi08g01440 659 MobiDBLite consensus disorder prediction 609 637 - -
Lsi08g01440 659 SMART serkin_6 333 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01440 659 MobiDBLite consensus disorder prediction 178 212 - -
Lsi08g01440 659 ProSiteProfiles Protein kinase domain profile. 333 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g01440 659 MobiDBLite consensus disorder prediction 41 55 - -
Lsi08g01440 659 MobiDBLite consensus disorder prediction 1 117 - -
Lsi08g01440 659 MobiDBLite consensus disorder prediction 228 276 - -
Lsi08g01440 659 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01440 - - - cmo:103487921 1145.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01214 Lsi-Chr5:20005153 Lsi08g01440 Lsi-Chr8:22594837 1.57E-83 dispersed
Lsi08g01440 Lsi-Chr8:22594837 Lsi09g00476 Lsi-Chr9:5009804 1.58E-69 dispersed
Lsi01g00997 Lsi-Chr1:8231330 Lsi08g01440 Lsi-Chr8:22594837 2.34E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g828 . . . . . . . . Cmo05g00205 Cmo12g00455 . . . Car12g00485 . . Cpe07g00458 Bhi04g00304 . . . . . . Cla08g01536 Cam08g2032 Cec08g1607 Cco08g1740 Clacu08g1719 . Cre08g1502 Cone4ag1555 Cone7ag1397 . . . . . Cme03g02003 Blo17g00831 . Bda08g01320 Bda01g01685 . Bpe05g00067 . . . . . Cma12g00514 Cma05g00206 Car05g00172 . Cpe11g00172 . . . . . . . . . . . . . . . Lsi08g01440 . Chy03g01508 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008635 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83861 PF00069 Pkinase 2.90E-53 CL0016 Lsi PK