Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01442 ATGAAGAATATAATGGGTTCAACACCCAAACAACCTTTCTTTTGCTTCAAATGGCCATGGGACGTAGACCATAAAAATCCTTTCGACTGTTCGTTTGAGGGTCCTTGGCTGTTCAAATCGCTGCAAAATGTGGGTGCCTTTGCTTTCAATTTTGTAAATAAAGTTTCAAAATCATCGCCTCCATGGATCAATACTTTTAAGCCACTGCAATTCGGTGCCTCAACTGGTGGAAATAAGATATCTCAATCTAGAAAGATGTTAACTCCTGAAGAGCAAGGGGAGGCGGAAAATAGAGCATTTGCAGCAGCATTAGCCAGTGAGAAAGAAGCCACCGTGATCGAGTTCTACTCGCCCAAATGTCGCCTTTGCAATTCCTTGCTCAATTTTGTCATGGAGATGGAAGCAAGGAATTCAAATTGGCTTAGTATTGTGATGGCAGATGCAGAGAATGATAAATGGCTGCCCGAGCTTCTTCATTATGACATTAGATATGTTCCTTGCTTTGTGTTGCTGGACAAACATGGCAAGGCGCTAGCGAAGACGGGTATTCCTAGCAGTCGGCTTCATGTAATTGCAGGACTTTCTCATCTTCTCAAACTGAAAGCGCCCAAGAATACTCCCTGA 624 43.11 MKNIMGSTPKQPFFCFKWPWDVDHKNPFDCSFEGPWLFKSLQNVGAFAFNFVNKVSKSSPPWINTFKPLQFGASTGGNKISQSRKMLTPEEQGEAENRAFAAALASEKEATVIEFYSPKCRLCNSLLNFVMEMEARNSNWLSIVMADAENDKWLPELLHYDIRYVPCFVLLDKHGKALAKTGIPSSRLHVIAGLSHLLKLKAPKNTP 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22603074 22605593 - Lsi08G014420.1 Lsi08g01442 669368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01442 207 Gene3D Glutaredoxin 89 193 - -
Lsi08g01442 207 PANTHER THIOREDOXIN, MITOCHONDRIAL 5 204 - -
Lsi08g01442 207 SUPERFAMILY Thioredoxin-like 100 179 IPR036249 -
Lsi08g01442 207 Pfam Thioredoxin 96 178 IPR013766 -
Lsi08g01442 207 PANTHER EXPRESSED PROTEIN 5 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01442 - - - mcha:111014082 365.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g823 . . . . . . . . . Cmo12g00456 . . . . . . Cpe07g00459 Bhi04g00309 . . . . . . Cla08g01537 Cam08g2033 Cec08g1608 Cco08g1743 Clacu08g1720 . Cre08g1503 . . Cone17ag1299 Cone20ag0171 . . . Cme03g02005 . . Bda08g01324 . . Bpe05g00066 . Bma05g00098 . . . Cma12g00516 . . . . . . . . . . . . . . . . . . . Lsi08g01442 Csa02g01999 Chy03g01510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009286 1 3 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34