Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01445 ATGAGTTTTATTTTGTTAACATCTGGCCTGGCCCTCTCAGTTTTTCATCTCCGCTCAACACGTTTCCCCATGGCTCCAATTTCTCTCTCTTCTTTCTCTCATCCGCCTTCAGTTGTTCCTTCGCCTTGTCTTCAACTTTACCGGCGAATCTTACTTCCCCGTAGAACTCTTGCTTGTTCTTCCTCCACTTCGATTTCTTCTGCTTCGATTACGTTTTCGTCAATTTCGGCGCCGGAAGTAGTGGTTACCAGAGAGCGCGGCAAGAACGGGAAGCTCGTTAATGCTCTCGCGAGACATGGAATAAACTGTTTGGAACTTCCCCTCATTCAACACAAACAAGGACCTGACTTGAATAGGCTACACTCTGTACTCAGTGGTAAGTCCTTTACGAATGGTTTTCTTTCCTTGTACTCCTCAAAGTTTCTCTCCATATCAAATGCACGCCCACATAATGTTGCAGGATATTCTGTATTTGACTGGATTGTGATAACTTCCCCTGAAGCTGGCTTGGTGTTCCTAGAGGCATGGAAGGCCGCTGGGATGCCAAAGGTTAGAATAGGTGTTGTGGGAGCTGGTACAGCTAACATTTTTGAGGAAGTGTTGCAATCATCAAAACTACTTGAAGTGGCATTTGCACCCTCGAAAGCTATATCATTTACTTACTGTCTTGAATCAAATAAGATGATGAAAAGCTCTCCAAAAACAATCGGCAAGGCCTTGGCTTCCGAGCTTCCGAAGTTGGGAAATGCAAAGTGCAGTGTCTTATATCCTGCTTCTACTAAAGCAAGCAATGATATTGAGGAAGTCCTTTCAAATCGTGGATTTGATGTCATGAGGCTTAACACCTACACTACGGTAAAGTATTCACGTTCCTTAGTATATCTTGCACCTGTTGATTATGTTGATCAAACCATTCTCGAGCAAGCACGTTCATTGCCTGTTGTCACAGTGGCTTCTCCTTCGGCAGTTCGAGCATGGGTCAATCTTATTTCAGAGCCAAAGGTGTGGGAAAAATCGCTCGCCTGTATTGGAGAAACAACTGCTGCAGCAGCAAAAAGATTAGGATTGAAAAACGTTTACTACCCCAAGAATCCTGGCTTGGAAGGGTGGGTTGATAGTATACTGGAAGCATTAAGATCAGAAGCTCAAGTTGTTGGTCATTTTTCAGACTAG 1173 43.99 MSFILLTSGLALSVFHLRSTRFPMAPISLSSFSHPPSVVPSPCLQLYRRILLPRRTLACSSSTSISSASITFSSISAPEVVVTRERGKNGKLVNALARHGINCLELPLIQHKQGPDLNRLHSVLSGKSFTNGFLSLYSSKFLSISNARPHNVAGYSVFDWIVITSPEAGLVFLEAWKAAGMPKVRIGVVGAGTANIFEEVLQSSKLLEVAFAPSKAISFTYCLESNKMMKSSPKTIGKALASELPKLGNAKCSVLYPASTKASNDIEEVLSNRGFDVMRLNTYTTVKYSRSLVYLAPVDYVDQTILEQARSLPVVTVASPSAVRAWVNLISEPKVWEKSLACIGETTAAAAKRLGLKNVYYPKNPGLEGWVDSILEALRSEAQVVGHFSD 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22633511 22640008 - Lsi08G014450.1 Lsi08g01445 669371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01445 390 Gene3D - 283 379 IPR036108 GO:0004852|GO:0033014
Lsi08g01445 390 Pfam Uroporphyrinogen-III synthase HemD 157 371 IPR003754 GO:0004852|GO:0033014
Lsi08g01445 390 Gene3D - 144 282 IPR036108 GO:0004852|GO:0033014
Lsi08g01445 390 CDD HemD 80 374 IPR003754 GO:0004852|GO:0033014
Lsi08g01445 390 SUPERFAMILY HemD-like 80 377 IPR036108 GO:0004852|GO:0033014
Lsi08g01445 390 PANTHER UROPORPHYRINOGEN-III SYNTHASE, CHLOROPLASTIC 38 218 IPR039793 GO:0004852|GO:0006780
Lsi08g01445 390 PANTHER UROPORPHYRINOGEN-III SYNTHASE, CHLOROPLASTIC 234 383 IPR039793 GO:0004852|GO:0006780
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01445 K01719 hemD, UROS; uroporphyrinogen-III synthase [EC:4.2.1.75] - csv:101203770 522.702
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g814 . . . . . . . . Cmo05g00204 Cmo12g00458 . . . Car12g00490 Sed11g0978 . Cpe07g00461 Bhi04g00312 Tan02g1896 Cmetu03g2106 . Hepe10g0702 . Lcy13g2032 Cla08g01540 Cam08g2035 Cec08g1611 Cco08g1745 Clacu08g1722 . Cre08g1506 . . Cone17ag1294 Cone20ag0173 . . . Cme03g02007 . . Bda08g01326 . . Bpe05g00063 . Bma05g00096 . . . . Cma05g00204 Car05g00169 . Cpe11g00170 . . . . . . . . . . . . . . . Lsi08g01445 Csa02g01995 Chy03g01512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007939 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 35