Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01446 ATGCCATCGAACGGCCCTGATTCGCAGCCGCAGCAGCAGGCGGCGCATCAGACAGAGCAGAATCAGCAAACGCACAAACAGCCGCAGCCGCAGCGGTGGATGGCGATGCAGTATCCGGCGGCCGCGATGATAATGCAGCACCCGATGATGCCGCCGCAGCATTACGTGCCTCCGTCTTCGCCGCACTATATCCCATACCGTCAATACCCGCCGCCGCATCAGCTTAATGGCCAGCAGCACCAGCAGCCACACCAGGGTTCCACCAGCGAGAACAAGACTATTTGGGTCGGCGATTTGCAGCATTGGATGGATGAGAATTACCTCCATAGCTGCTTCGCTTCCACCGGCGAGATTTCTTCCCTTAAAGTCATTCGTAATAAGCAAACTGGTATATCAGAAGGCTATGGATTTGTAGAATTTTTCTCTCATAACACAGCAGAGAAAGTTCTGCAGAACTATTCTTCAATTTTGATGCCTAATACTGAGCAAGCTTTCCGGCTAAACTGGGCAACATTTAGCACTGGCGACAAGCGTTCAGAAAATGGTTCTGATCTTTCTATTTTTGTAGGAGATTTAGCAGCGGATGTTACTGACAGTGTACTGCATGAAACTTTTGCTAGTAAATATTCATCTGTCAAAGCAGCAAAAGTTGTCTATGATCCAAATACTGGTTGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGATAATGAGAGGTCTCAGGCCATGACTGAAATGAATGGCATATATTGCTCAAGCAGGCCTATGCGCATTGGTGCAGCGACACCCAAAAAGTCATCTGGATATCAGCAGCAATATTCTTCACAAGGATATGCATCAAATGGTTCATTCTCCCATGGACACCAGTCTGATGGAGATTTTACAAATACAACTATATTCATTGGAGGGCTTGATCCAAATGTTACTGATGACGATCTTAAGCAGCTCTTTTCTCAGCATGGAGACATAGTATCTGTTAAAATACCAGTTGGAAAAGGTTGTGGTTTCATCCAATTTGCAAACAGAAAGAATGCTGAAGAGGCATTGCAGAAACTAAATGGAACTGTGATCGGCAAGCAAACAGTACGTCTTTCTTGGGGACGTAGTCCAACAAATAAGCAGTACCGAGCTGATTATGGTAACCACTGGAGTGGAGCCTACTATGGAGGACAAATGTATGGCGGATATGGATATGCTCTGCCGCTACCTTATGATCCACCAACCATGTATGCTGCAGCATATGGAGCTTACCCTATGTATGGCACCCATCAACAGCAAGTGAACTGA 1290 45.97 MPSNGPDSQPQQQAAHQTEQNQQTHKQPQPQRWMAMQYPAAAMIMQHPMMPPQHYVPPSSPHYIPYRQYPPPHQLNGQQHQQPHQGSTSENKTIWVGDLQHWMDENYLHSCFASTGEISSLKVIRNKQTGISEGYGFVEFFSHNTAEKVLQNYSSILMPNTEQAFRLNWATFSTGDKRSENGSDLSIFVGDLAADVTDSVLHETFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTEMNGIYCSSRPMRIGAATPKKSSGYQQQYSSQGYASNGSFSHGHQSDGDFTNTTIFIGGLDPNVTDDDLKQLFSQHGDIVSVKIPVGKGCGFIQFANRKNAEEALQKLNGTVIGKQTVRLSWGRSPTNKQYRADYGNHWSGAYYGGQMYGGYGYALPLPYDPPTMYAAAYGAYPMYGTHQQQVN 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22647082 22651194 - Lsi08G014460.1 Lsi08g01446 669372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01446 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Lsi08g01446 429 CDD RRM3_NGR1_NAM8_like 297 368 - -
Lsi08g01446 429 Gene3D - 286 400 IPR012677 -
Lsi08g01446 429 SUPERFAMILY RNA-binding domain, RBD 170 291 IPR035979 GO:0003676
Lsi08g01446 429 SUPERFAMILY RNA-binding domain, RBD 57 173 IPR035979 GO:0003676
Lsi08g01446 429 MobiDBLite consensus disorder prediction 53 90 - -
Lsi08g01446 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Lsi08g01446 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 257 IPR000504 GO:0003723
Lsi08g01446 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Lsi08g01446 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Lsi08g01446 429 MobiDBLite consensus disorder prediction 53 68 - -
Lsi08g01446 429 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 25 428 - -
Lsi08g01446 429 CDD RRM2_SECp43_like 184 263 - -
Lsi08g01446 429 CDD RRM1_SECp43_like 93 173 - -
Lsi08g01446 429 Gene3D - 91 170 IPR012677 -
Lsi08g01446 429 MobiDBLite consensus disorder prediction 1 31 - -
Lsi08g01446 429 Gene3D - 171 280 IPR012677 -
Lsi08g01446 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 428 - -
Lsi08g01446 429 SUPERFAMILY RNA-binding domain, RBD 291 398 IPR035979 GO:0003676
Lsi08g01446 429 MobiDBLite consensus disorder prediction 72 90 - -
Lsi08g01446 429 SMART rrm1_1 93 168 IPR000504 GO:0003723
Lsi08g01446 429 SMART rrm1_1 299 366 IPR000504 GO:0003723
Lsi08g01446 429 SMART rrm1_1 186 260 IPR000504 GO:0003723
Lsi08g01446 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01446 - - - csv:101204014 787.334
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01583 Lsi08g01446 CCT
Lsi04g01583 Lsi08g01446 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00587 Lsi-Chr8:14135174 Lsi08g01446 Lsi-Chr8:22647082 3.45E-11 dispersed
Lsi08g01446 Lsi-Chr8:22647082 Lsi09g00425 Lsi-Chr9:4503185 1.87E-138 dispersed
Lsi04g00534 Lsi-Chr4:4939731 Lsi08g01446 Lsi-Chr8:22647082 5.59E-07 transposed
Lsi04g01583 Lsi-Chr4:23380579 Lsi08g01446 Lsi-Chr8:22647082 1.25E-08 transposed
Lsi10g00027 Lsi-Chr10:443476 Lsi08g01446 Lsi-Chr8:22647082 2.94E-06 transposed
Lsi11g00695 Lsi-Chr11:7325362 Lsi08g01446 Lsi-Chr8:22647082 3.91E-11 transposed
Lsi10g00304 Lsi-Chr10:4890733 Lsi08g01446 Lsi-Chr8:22647082 7.92E-176 wgd
Lsi04g01582 Lsi-Chr4:23379924 Lsi08g01446 Lsi-Chr8:22647082 2.07E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117