Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01447 ATGGGGTCTGACAACATTTCTGTTGGTTTATTAGATACCCTCAAAATGAAGAGGGTTCGGACCATTTTCACTCACACATATCCGTATCCTCATGAACATTCGCGGCATGCTATTATTGCGGTGGTGGTTGGTTGCTTATTTTTTATATCTTCTGACAACATGCACACTCTCATCGACAAATTGGATCAGAATATCAAATGGTGGTCTATATACTCATGTTTGCTTGGTTTCTTTTATTTCTTTTCATCACCATTTATTGGGAAAACCATTAAACCTAGCTATTCAAATTTCAGTCGGTGGTACATAGCCTGGATTTTAGTGGCAGCTGTGTATCATCTTCCAAGTTTTCAGTCAATGGGAGTGGATATAAGGATGAATCTTTCAATGTTCATAACGATATATATCTCTTCCATTCTGTTTCTTACAGTATTTCATATTCTCTTCATTGGCCTTTGGTACGTTGGTCTGGTCTCACGTGTTGCTGGAAAGAGGCCTGAGATTTTGGCAATTTTTCAGAATTGTGCTGTCATAAGTATAGCCTGCTGTGTGTTTTACAGTCACTGTGGCAATCATGGTGTTTTGAAAGACAGAACAAGAACCTCTCATTGGTTTCCTTTCTGGAAGAAAGAAGAGCGAAACACTTGGCTCGCAAAATTTCTTCGTGTAAATGAATTGAAGGATCAGGTGTGCTCATCTTGGTTCGCACCTGTTGGGTCTGCAAGTGATTACCCACTTTTGTCTAAGTGGGTAATTTATAGCGAGTTAGCTTGCAATGGCTCATGTGCTGGTCCATCTGATGGGATTTCACCCATATACTCACTTTGGGCTACATTCATTGGCCTTTACATTGCGAACTATGTGGTGGAACGGTCAACAGGGTGGGCTCTTTCGCATCCTTTATCTGTTAAAGAATATGAAAAGCTGAAGAGAAAGCAAATGAAGCCTGATTTCCTCGACATGGTTCCTTGGTATTCAGGAACTTCTGCTGATTTATTCAAGACTGTTTTTGACCTACTTGTTTCAGTGACCGTCTTTGTTGGTCGATTTGACATGCGCATGATGCAGGCAGCAATGCGCAAGCTTGAAGATGGAGCTCAACAGGATGGTCTATTATATGATCATTATAGTGAAAGGGACGACTTATGGTTTGATTTCATGGCTGATACTGGCGATGGCGGGAACTCATCTTATAGTGTTGCACGTTTGCTTGCTCAACCTTCCATTCGGATAGTTGAAGATGATTCAGTTTTCAACTTACCACGTGGAGACATGTTACTCATAGGGGGGGATCTCGCGTATCCTAATCCATCAGCATTCACATATGAAAGACGTTTCTTTTGTCCTTTTGAATATGCTCTTCAACCTCCTCCTTGGTATAAAGCAGATCATATAGCTGTGAAGAAGCCTGAGTTACCTCATGGGATGTCTGAACTGAAGCAATATGATGGACCTCAGTGTTATGTAATTCCTGGAAATCATGATTGGTTCGATGGACTTCATACCTATATGAGATACATATGTCATAAGAGCTGGTTGGGTGGGTGGTTTATGCCTCAGAAGAAGAGTTATTTTGCCCTGAAACTTCCTAAAAGATGGTGGGTATTTGGTCTGGATCTAGCACTCCATGGTGATATTGATGTCTACCAATTCAAATTCTTTTCAGAACTTGTGCAGGAAAAGATGGGAGCTGATGACTTAGTAATCATCATGACTCATGAACCAAATTGGTTGCTTGACTGTTACTGGAAGGATGTTTCTGGGAAGAATGTCTCGCACCTAATATGTGATTATCTTAAAGGGAGGTGTAAACTTCGAATTGCTGGAGACTTGCATCATTATATGCGCCATTCTGCTGTTAAATCAGATGAATCTGTAAATGTGCACCATCTTCTTGTAAATGGCTGTGGTGGGGCTTTTTTACACCCAACCCATGTCTTTAGTAATTTTCGAAAATTTTGTGGGTCTACGTATGAGTGCAAGGCTGCTTATCCTTCCTTTGAAGATTCTGGCAGGATTGCTTTAGGAAATATTTTGAAATTCCGGAAGAAAAATTGGCAATTTGATTTCATTGGTGGCATCATATACTTCATATTGGTCTTTTCTATGTTCCCACAGTGTAAGCTCGATCACATCTTGCAAGAAGATTCATTTTCGGGTCACTTGAAGAGTTTCTTTGGCACGGTGTGGAATGCTTTTCTGTACATGCTGGGAGAGTCATGTGTATCTTTGGCTGGTGCTATTGTATTATTGATTGTAGCAGTAACATTTATTCCTAGCAAAGCATCCAAGAAGAAACGGGTAATAATTGGACTTCTTCATGTTTCTGCACATCTTGCTGCAGCTCTTTTTCTTATGTTGCTATTGGAACTGGGGTTGGAGACCTGCATCCGTCATGAATTACTAGCAACATCAGGCTATCACACTTTGTATGAATGGTACCGTACAAAGGAAGGTGAGCACTTTCCTGATCCAACTGGTCTTCGTGCCCGATTAGAAGAATGGACATATGGCCTATATCCAGCCTGTATCAAATATCTTATGTCTGCATTTGATATACCTGAGGTCATGGCTGTCTCACGTAGTAATATTTGCAAGAATGGAATGCAATCACTTTCTCGAGGAGGTGCTATGATATATTATGGCTCCGTCTTCTTTTATTTCTGGGTTTTCTCAACACCGGTCGTCTCCTTCGTTTTTGGAAGCTATTTATACGTATGTATCAATTGGCTTCACATTCACTTTGATGAAGCATTCTCTTCATTGAGGATTGCAAATTATAAGTCATTCACTCGATTCCACATCAATCGTGATGGCGATCTCGAAGTTTTTACTCTTGCTGTTGACAAGGTTCCGAAAGAATGGAAGTTGGATTCCAAGTGGGAAGGGGAGGCAAGACAACCGGAGCAGCTGAGCCACCGAAGGTTGTTTCCGAGCAAGTGGAAGGCGGCTGCATCACATCAGGATCCAGTGCACACTGTTAAAATTGTCGATCAGTTTGTTATTAGACAAGAAAGAGCTAAAGATGATTTTGAAGTTGCCAATGGGTCAGAAATTCACTGA 3060 40.98 MGSDNISVGLLDTLKMKRVRTIFTHTYPYPHEHSRHAIIAVVVGCLFFISSDNMHTLIDKLDQNIKWWSIYSCLLGFFYFFSSPFIGKTIKPSYSNFSRWYIAWILVAAVYHLPSFQSMGVDIRMNLSMFITIYISSILFLTVFHILFIGLWYVGLVSRVAGKRPEILAIFQNCAVISIACCVFYSHCGNHGVLKDRTRTSHWFPFWKKEERNTWLAKFLRVNELKDQVCSSWFAPVGSASDYPLLSKWVIYSELACNGSCAGPSDGISPIYSLWATFIGLYIANYVVERSTGWALSHPLSVKEYEKLKRKQMKPDFLDMVPWYSGTSADLFKTVFDLLVSVTVFVGRFDMRMMQAAMRKLEDGAQQDGLLYDHYSERDDLWFDFMADTGDGGNSSYSVARLLAQPSIRIVEDDSVFNLPRGDMLLIGGDLAYPNPSAFTYERRFFCPFEYALQPPPWYKADHIAVKKPELPHGMSELKQYDGPQCYVIPGNHDWFDGLHTYMRYICHKSWLGGWFMPQKKSYFALKLPKRWWVFGLDLALHGDIDVYQFKFFSELVQEKMGADDLVIIMTHEPNWLLDCYWKDVSGKNVSHLICDYLKGRCKLRIAGDLHHYMRHSAVKSDESVNVHHLLVNGCGGAFLHPTHVFSNFRKFCGSTYECKAAYPSFEDSGRIALGNILKFRKKNWQFDFIGGIIYFILVFSMFPQCKLDHILQEDSFSGHLKSFFGTVWNAFLYMLGESCVSLAGAIVLLIVAVTFIPSKASKKKRVIIGLLHVSAHLAAALFLMLLLELGLETCIRHELLATSGYHTLYEWYRTKEGEHFPDPTGLRARLEEWTYGLYPACIKYLMSAFDIPEVMAVSRSNICKNGMQSLSRGGAMIYYGSVFFYFWVFSTPVVSFVFGSYLYVCINWLHIHFDEAFSSLRIANYKSFTRFHINRDGDLEVFTLAVDKVPKEWKLDSKWEGEARQPEQLSHRRLFPSKWKAAASHQDPVHTVKIVDQFVIRQERAKDDFEVANGSEIH 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22658489 22667263 + Lsi08G014470.1 Lsi08g01447 669373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01447 1019 PANTHER CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN 2 1016 - -
Lsi08g01447 1019 SUPERFAMILY Metallo-dependent phosphatases 381 646 IPR029052 -
Lsi08g01447 1019 Pfam Calcineurin-like phosphoesterase 383 612 IPR004843 GO:0016787
Lsi08g01447 1019 Gene3D - 381 692 IPR029052 -
Lsi08g01447 1019 PANTHER - 2 1016 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01447 - - - csv:101204257 2031.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g812 . . . . . . . . . Cmo12g00460 . . . Car12g00492 . . Cpe07g00463 Bhi04g00314 Tan02g1892 . . . . Lcy13g2034 Cla08g01543 Cam08g2037 Cec08g1614 Cco08g1747 Clacu08g1724 . Cre08g1508 . . Cone17ag0829 Cone20ag0174 . . . Cme03g02009 . . Bda08g01327 . . Bpe05g00062 . . . . . Cma12g00519 . . . . . . . . . . . . . . . . . . . Lsi08g01447 Csa02g01993 Chy03g01514 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007270 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 2 1 1 2 1 1 2 3 1 37