Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01454 ATGGCGAGGGTAGAGTGGGGTTATCAAGGAAGAGGTAAATGGGCGTGTTCGTACAAGAAAACCACTCTCATCATTTGCTCTATCAACATTATCGTTGCTCTCTATGTTTTTCGATCTCTATATGCCTCCCTCTACCTCTATACGGATAATGATTCGCGAAGTGTTGTAAAGTACACTCCGGATCAGATTAGAAAAATGGAAGAGTTTATTCGGATTCGTAGGGCCTCTGAGCCGGTAGAGCTCATTAAATTGGTCAAGGGGCTTAAAGAATTCTCCCAAGAACAGATGGTGGATGAATTACCTCATCCATTGAAACAGAAGATAACCGAGGAAATTCTTCTAAAGTTGAGAAGCTTGAATGCTAGCTCAAATAGTACTCAGCAGAGAGAAGCAGTAGAAAGCTGGAGAAAGGAAAAATTGGAAGAAGCATATAAGTTGATCACAGAGCAAATGATTGAAAATTCAACTCTTTCTTTTGAAGATGCTGGGATTCTAGTAAAAGCCTTGGAGACTGATTGGGCAGTGCTGTCTGAAGCAATTGGTCTGTGGATACCTGCAGAGGTCTTCCACACGGAACATGATGATAAGCCTGAGGGCGTAGATGAATTCAATGATGAGATTTTACCTGGAAGACCAGTTCCACCTGAATGTCATGCTGAGCTCCATACAGATTACGATGGTGCTGCAGTAAGATGGGGTCTAACTCATCATAAAGAAAGTGCAGCTGATTGCTGTCAGGCTTGCTTGGATCACGCAAAACGGGCGCAACCAGGTGACAGGAAATGCAACATCTGGGTTTACTGTCCATCCGAGACTGGATGCCACTCTCCTGACATCTACGAACATAAACATATGGAATGCTGGCTGAAATATGCAGAAAATCCCAAACTGAATTTCAAAACCAACTATCCGCAATCTTATAGAAACTCACACCCGACTGCGCCGCTGGTTGTACCTTGGGTCTCTGGTGTTCTTCCCGTTGCGTCGCACCACCCCGCCGCCGCCATCTCCGTCGCGCTCAGCGCCGCACCCTTTCTTCGCCGATCTTCTCCCCTCCGTTGGTTTCAGGCACTAGCACTGTATTTAGCTAATAATTCCCATTGCATATATCTCAAGGTTGTTGGAAAAAAATCCCATCCCACAATGAGTTCAAGCAGTGGCTCCATTGGTGAAACTTATTATGATGTACTGTCTTTGAGAGAAGATGCTAGCTATGACGAAATTCGAGCCAGCTATCGGTCTGCTCTCCTTAATTTCCACCCTGATAAGTTACAAGCTATATGCCATAGATCCCATCCAGACGACATTGCGGGAGAAAGATACTTCAAGGTGCAGAAGGCTTGGGAAGTCCTCGGCAGCTCAATGTCCCGTGCATCTTATGACAGAGAGCTCCAAGCTGCCAAAGGGGATGCAATTGGTGCAGAGAGCATATGCTTAGAGGATATGGTTGTGGAAGATAAAGGTGAAGTTGTAGAACTTTTTTATCAGTGCCGTTGTGGGGATTACTTCTTTATTGATTCAGGGGAGTTGGATGAAATGGGATATCCATTGTTGAGGAATGGAAGTAAGGTTTCTTTAAGGACTCTGGATGCTTTGCCTGCTTCCGTTGTTTTACCTTGTGGTTCTTGCTCTTTGAAAATCCTCGGCATTTCATTCTCGAATGATTTCGATGTTGTAAAGAGAGCTTATGACTGTGTTGCGCTCTTGGGTAGAGTTTACGTCGGTTTTCTTTAA 1734 44.64 MARVEWGYQGRGKWACSYKKTTLIICSINIIVALYVFRSLYASLYLYTDNDSRSVVKYTPDQIRKMEEFIRIRRASEPVELIKLVKGLKEFSQEQMVDELPHPLKQKITEEILLKLRSLNASSNSTQQREAVESWRKEKLEEAYKLITEQMIENSTLSFEDAGILVKALETDWAVLSEAIGLWIPAEVFHTEHDDKPEGVDEFNDEILPGRPVPPECHAELHTDYDGAAVRWGLTHHKESAADCCQACLDHAKRAQPGDRKCNIWVYCPSETGCHSPDIYEHKHMECWLKYAENPKLNFKTNYPQSYRNSHPTAPLVVPWVSGVLPVASHHPAAAISVALSAAPFLRRSSPLRWFQALALYLANNSHCIYLKVVGKKSHPTMSSSSGSIGETYYDVLSLREDASYDEIRASYRSALLNFHPDKLQAICHRSHPDDIAGERYFKVQKAWEVLGSSMSRASYDRELQAAKGDAIGAESICLEDMVVEDKGEVVELFYQCRCGDYFFIDSGELDEMGYPLLRNGSKVSLRTLDALPASVVLPCGSCSLKILGISFSNDFDVVKRAYDCVALLGRVYVGFL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22703652 22711895 - Lsi08G014540.1 Lsi08g01454 669380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01454 577 SMART dnaj_3 391 456 IPR001623 -
Lsi08g01454 577 PRINTS DnaJ domain signature 436 456 IPR001623 -
Lsi08g01454 577 PRINTS DnaJ domain signature 412 427 IPR001623 -
Lsi08g01454 577 PRINTS DnaJ domain signature 394 412 IPR001623 -
Lsi08g01454 577 SUPERFAMILY Chaperone J-domain 391 464 IPR036869 -
Lsi08g01454 577 PANTHER OS02G0761600 PROTEIN 11 325 - -
Lsi08g01454 577 CDD DnaJ 392 452 IPR001623 -
Lsi08g01454 577 Pfam DnaJ domain 392 461 IPR001623 -
Lsi08g01454 577 SUPERFAMILY CSL zinc finger 473 548 IPR036671 -
Lsi08g01454 577 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 473 552 IPR007872 -
Lsi08g01454 577 Gene3D DnaJ domain 377 469 IPR036869 -
Lsi08g01454 577 ProSiteProfiles dnaJ domain profile. 392 464 IPR001623 -
Lsi08g01454 577 Pfam CSL zinc finger 476 547 IPR007872 -
Lsi08g01454 577 Gene3D DPH Zinc finger 470 560 IPR036671 -
Lsi08g01454 577 PANTHER PLANT/F17M5-140 PROTEIN 11 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01454 - - - csv:101221262 635.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01454 Lsi-Chr8:22703652 Lsi02g02460 Lsi-Chr2:31107202 1.19E-08 dispersed
Lsi08g01454 Lsi-Chr8:22703652 Lsi10g00475 Lsi-Chr10:6875556 1.09E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g785 . . . . . . . . Cmo05g00192 Cmo12g00467 . . . Car12g00496 Sed11g0973 . Cpe07g00468 Bhi04g00327 Tan02g1878 Cmetu03g2023 . Hepe10g0714 . Lcy13g2043 Cla08g01550 Cam08g2045 Cec08g1623 Cco08g1756 Clacu08g1733 . Cre08g1517 . . Cone17ag0835 Cone20ag0180 . . . Cme03g02017 Blo17g00847 . Bda08g01341 . . Bpe05g00057 . Bma05g00079 . . . Cma12g00525 Cma05g00193 Car05g00162 . Cpe11g00161 . . . . . . . . . . . . . . . Lsi08g01454 Csa02g01984 Chy03g01521 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006091 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 39