Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01456 CTATATTTTCAAAACAGTGGGAAGTTAACGGTCGACTATCAATCAATTTTCCGTACGAAATCCAAATTTCCCCAACTCCCAAATATACTGAATCTCGTCATTTCTGCTATTCGCCAAACCCTACGAAGCAAGGAAGAAGAAGAAGAAGAAGAGAACATGGGGATCTCTAACCTCTCATACGAGGAATGTCGTCGCAAAAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTACCCTTGCTTTCTCAAGCTCTCCTCGACCCTTCCCTTTCCAAGTCCTCCCCTAGTAAGCAGGTCAAGCCTCGCGTGACGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGAGTAGCAAAGCAATCAGCCCCTGTTTACGCTGAAGTTCTTGTTGATCGCGTGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTTTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTCAGGAGTTACAATCTGGATTGGAGCCGAATTATCCCAACTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGGTTTTTCAATTGCTCATAAGTTAGCAGATGGAGATGCTGTGGTTTTTCAACTCATTAAACCTACAGCCTGCAAGGTCTACATCTTTAGGGCGGATGGTTCCAAAGAAGATAGTGATTCTAACAGCAGCTAA 846 43.62 LYFQNSGKLTVDYQSIFRTKSKFPQLPNILNLVISAIRQTLRSKEEEEEEENMGISNLSYEECRRKRVEENKKRMEALNLPLLSQALLDPSLSKSSPSKQVKPRVTQKQLVVVRRSSRVAKQSAPVYAEVLVDRVAIPRRISRARDFSDQFYASDEARKNAFERAQELQSGLEPNYPNCIKSMVRSHVSGCFWLGLPSHFCKTHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKGFSIAHKLADGDAVVFQLIKPTACKVYIFRADGSKEDSDSNSS 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22719630 22722426 + Lsi08G014560.1 Lsi08g01456 669382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01456 281 CDD B3_DNA 177 268 IPR003340 GO:0003677
Lsi08g01456 281 PANTHER B3 DOMAIN-CONTAINING PROTEIN 53 274 - -
Lsi08g01456 281 Pfam B3 DNA binding domain 180 269 IPR003340 GO:0003677
Lsi08g01456 281 ProSiteProfiles B3 DNA-binding domain profile. 179 270 IPR003340 GO:0003677
Lsi08g01456 281 SUPERFAMILY DNA-binding pseudobarrel domain 173 270 IPR015300 -
Lsi08g01456 281 Gene3D - 153 271 IPR015300 -
Lsi08g01456 281 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 53 274 IPR044837 -
Lsi08g01456 281 SMART B3_2 179 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00204 Lsi-Chr5:2795470 Lsi08g01456 Lsi-Chr8:22719630 3.83E-37 dispersed
Lsi08g01456 Lsi-Chr8:22719630 Lsi10g00566 Lsi-Chr10:8283459 7.50E-37 dispersed
Lsi08g01456 Lsi-Chr8:22719630 Lsi08g01457 Lsi-Chr8:22726663 6.31E-113 tandem
Lsi03g00485 Lsi-Chr3:5550365 Lsi08g01456 Lsi-Chr8:22719630 1.90E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25821 PF02362 B3 6.50E-13 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01456 - - csv:101205473 362.073