Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01457 ATGGAAGCCCTAAATTTGCCATTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCTCCTGTTTATGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGGTCTCTAAAGCTAGAGATTTGTCAAACCGGGTATATGCTTCGGATGAAGCGAGACAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCAAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTTTGGCTGGGCCTTCCTTCTTATTTCTGCAAGATTCACCTTCCAAGTCGTGATGGAGTAATGACTTTAATAGATGAAGATGGCGATGAGTATCCGACAATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAAGGTTTTTCAGTTGCTCATAAGTTGGCAGATGGGGATGCTGTGGTTTTTCAATTCATTAAACCTACAATATGCAAGGTAAGAGGTAGCCTGATGGGAAGTGCACATAATGCAACTACTTTTTGTCATGTTGGTTTTGGAGTAGAATGCAATCTCTGTCTTGTACAATCAGTGTCTATGAAGAAAATGCAAGCACTATGTAGTAGTGATTGTCTGTTGTAG 711 43.04 MEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRVSKARDLSNRVYASDEARQNAFERAEQLQSGLEPNYPNFIKSMLQSHVSGGFWLGLPSYFCKIHLPSRDGVMTLIDEDGDEYPTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTICKVRGSLMGSAHNATTFCHVGFGVECNLCLVQSVSMKKMQALCSSDCLL 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22726663 22729119 + Lsi08G014570.1 Lsi08g01457 669383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01457 236 PANTHER B3 DOMAIN-CONTAINING PROTEIN 1 190 - -
Lsi08g01457 236 Pfam B3 DNA binding domain 105 184 IPR003340 GO:0003677
Lsi08g01457 236 Gene3D - 79 192 IPR015300 -
Lsi08g01457 236 ProSiteProfiles B3 DNA-binding domain profile. 105 202 IPR003340 GO:0003677
Lsi08g01457 236 SUPERFAMILY DNA-binding pseudobarrel domain 99 190 IPR015300 -
Lsi08g01457 236 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 190 IPR044837 -
Lsi08g01457 236 CDD B3_DNA 103 186 IPR003340 GO:0003677
Lsi08g01457 236 SMART B3_2 105 193 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00485 Lsi-Chr3:5550365 Lsi08g01457 Lsi-Chr8:22726663 1.63E-54 dispersed
Lsi08g01457 Lsi-Chr8:22726663 Lsi10g00566 Lsi-Chr10:8283459 2.10E-33 dispersed
Lsi08g01456 Lsi-Chr8:22719630 Lsi08g01457 Lsi-Chr8:22726663 6.31E-113 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25822 PF02362 B3 3.00E-11 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01457 - - csv:101205473 320.472