Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g01457 | ATGGAAGCCCTAAATTTGCCATTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCTCCTGTTTATGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGGTCTCTAAAGCTAGAGATTTGTCAAACCGGGTATATGCTTCGGATGAAGCGAGACAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCAAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTTTGGCTGGGCCTTCCTTCTTATTTCTGCAAGATTCACCTTCCAAGTCGTGATGGAGTAATGACTTTAATAGATGAAGATGGCGATGAGTATCCGACAATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAAGGTTTTTCAGTTGCTCATAAGTTGGCAGATGGGGATGCTGTGGTTTTTCAATTCATTAAACCTACAATATGCAAGGTAAGAGGTAGCCTGATGGGAAGTGCACATAATGCAACTACTTTTTGTCATGTTGGTTTTGGAGTAGAATGCAATCTCTGTCTTGTACAATCAGTGTCTATGAAGAAAATGCAAGCACTATGTAGTAGTGATTGTCTGTTGTAG | 711 | 43.04 | MEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRVSKARDLSNRVYASDEARQNAFERAEQLQSGLEPNYPNFIKSMLQSHVSGGFWLGLPSYFCKIHLPSRDGVMTLIDEDGDEYPTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTICKVRGSLMGSAHNATTFCHVGFGVECNLCLVQSVSMKKMQALCSSDCLL | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22726663 | 22729119 | + | Lsi08G014570.1 | Lsi08g01457 | 669383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g01457 | 236 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN | 1 | 190 | - | - | |
Lsi08g01457 | 236 | Pfam | B3 DNA binding domain | 105 | 184 | IPR003340 | GO:0003677 | |
Lsi08g01457 | 236 | Gene3D | - | 79 | 192 | IPR015300 | - | |
Lsi08g01457 | 236 | ProSiteProfiles | B3 DNA-binding domain profile. | 105 | 202 | IPR003340 | GO:0003677 | |
Lsi08g01457 | 236 | SUPERFAMILY | DNA-binding pseudobarrel domain | 99 | 190 | IPR015300 | - | |
Lsi08g01457 | 236 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 1 | 190 | IPR044837 | - | |
Lsi08g01457 | 236 | CDD | B3_DNA | 103 | 186 | IPR003340 | GO:0003677 | |
Lsi08g01457 | 236 | SMART | B3_2 | 105 | 193 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00485 | Lsi-Chr3:5550365 | Lsi08g01457 | Lsi-Chr8:22726663 | 1.63E-54 | dispersed | |
Lsi08g01457 | Lsi-Chr8:22726663 | Lsi10g00566 | Lsi-Chr10:8283459 | 2.10E-33 | dispersed | |
Lsi08g01456 | Lsi-Chr8:22719630 | Lsi08g01457 | Lsi-Chr8:22726663 | 6.31E-113 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25822 | PF02362 | B3 | 3.00E-11 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g01457 | - | - | csv:101205473 | 320.472 |