Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g01473 ATGGCTCCAAATTTTTTACTCTTTTCCATCTTTCTTCTTCCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTAATTCTCTTGCAAATTCATAACAACAATAAGTTCCCAAAGAAGAAACTCCCTCCTGGCTCAATGGGTTGGCCTTTAATCGGCGAGACCTTTCATTTTTATTCTCAAGATCCAACCTCTTTCTTCCTTGGAAAACAAAAAAGATATGGAGAGATATTCAAGACCCACATTCTTGGGTGTCCGTGTGTGATGTTAGCGACTCCTGAGGCGGCTCGATTCGTGCTAGTGACACAGGCTCATCTCTTCAAACCTACATATCCACAAAGCAAAGAGCGATTAATTGGACCATCGGCTCTGTTTTTCCACCAAAGTGAAACCCATTTGCGGCTGCGTAAACTAATCCAAAGCTCTCTCTCACCGGACCCTGTTCGAGCCTTGGTCCCTGACATCCACGCCCTAGCTATCTCTACATTGCCCTCATGGCTCAATGGCCATCTCATTAACACTTTCCATCAAATGAAGAAGTTCTCTTTTGAAGTCGGAATTTTGGCAATTTTCGGGCATTTGGAGGACACCAATTACAGAGAGGAACTAATGACAAACTATTCCATAGTGAACAAAGGCTATAATTCTTTCCCCACCAACATTCCCGGAACGCTTTACAAAAAAGCGCTTAAAGCAAGAAAGAGACTGGGAGAGATCATAAGCTGTATAATCTCAGAGAGAAGGGAGAAGAGAAAGGAATTAGGGGAGAAGAATCTATTGGCATGTTTGCTAAAATGGAGAGATGAAAAAGGAGAAACTTTAAGTGATGAACAGATCGCCGACAACATTATCGGAGTTCTGTTTGCTGCTCAGGACACCACGGCCAGTGTTCTCACTTGGGTTGTTAAATATCTACATGATAACCACAAAGTTCTAGAAGCTGTCAAGGTAAGTCACTCCCCACTTTCCCATGTGGAACAAAAGGCAATTGAAGAAGGCATTAATGGGGGGAGCCGACCAATGAGCTGGGCTCAGACACGAAACATGCCCTTTACCAACAAGGTAGGAGCAGGCCGGATTAATTCAACCATGAATATTCACCATAATCCTGACTACTTTGTTGACCCTCATAAATTTGATCCTTCAAGATTTGAGGTTGCACCAAGACCCAATACATTCATGCCATTTGGAAGTGGGGTCCATGCCTGCCCTGGAAATGAGCTTGCCAAGCTTGAAATCTTGATCATGATCCACCATCTAGTCACAAAATTCAGGTGGGAATTGGCAGGACAGAGAGATGGGATTCTGCATGGGCCATTTCCAGTGCCTATAAATGGGCTTCCCATCAGAGTCTGGAGATTATCCACTTGA 1383 43.38 MAPNFLLFSIFLLPILLLLLLLLLLLLLLLILLQIHNNNKFPKKKLPPGSMGWPLIGETFHFYSQDPTSFFLGKQKRYGEIFKTHILGCPCVMLATPEAARFVLVTQAHLFKPTYPQSKERLIGPSALFFHQSETHLRLRKLIQSSLSPDPVRALVPDIHALAISTLPSWLNGHLINTFHQMKKFSFEVGILAIFGHLEDTNYREELMTNYSIVNKGYNSFPTNIPGTLYKKALKARKRLGEIISCIISERREKRKELGEKNLLACLLKWRDEKGETLSDEQIADNIIGVLFAAQDTTASVLTWVVKYLHDNHKVLEAVKVSHSPLSHVEQKAIEEGINGGSRPMSWAQTRNMPFTNKVGAGRINSTMNIHHNPDYFVDPHKFDPSRFEVAPRPNTFMPFGSGVHACPGNELAKLEILIMIHHLVTKFRWELAGQRDGILHGPFPVPINGLPIRVWRLST 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22849026 22853964 - Lsi08G014730.1 Lsi08g01473 669399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g01473 460 Pfam Cytochrome P450 367 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 Pfam Cytochrome P450 47 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PANTHER CYTOCHROME P450 26 366 456 - -
Lsi08g01473 460 Gene3D Cytochrome P450 35 360 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PRINTS E-class P450 group I signature 282 299 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PRINTS E-class P450 group I signature 397 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PRINTS E-class P450 group I signature 366 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PRINTS E-class P450 group I signature 407 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PRINTS P450 superfamily signature 407 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PRINTS P450 superfamily signature 398 407 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PRINTS P450 superfamily signature 293 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 PANTHER CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE 22 359 - -
Lsi08g01473 460 PANTHER CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE 366 456 - -
Lsi08g01473 460 SUPERFAMILY Cytochrome P450 42 456 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 Gene3D Cytochrome P450 361 458 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g01473 460 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 400 409 IPR017972 GO:0005506|GO:0016705
Lsi08g01473 460 PANTHER CYTOCHROME P450 26 22 359 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01563 Lsi08g01473 CCT
Lsi04g01563 Lsi08g01473 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01343 Lsi-Chr2:17923191 Lsi08g01473 Lsi-Chr8:22849026 9.91E-26 dispersed
Lsi07g00776 Lsi-Chr7:8469411 Lsi08g01473 Lsi-Chr8:22849026 3.12E-131 dispersed
Lsi08g01473 Lsi-Chr8:22849026 Lsi06g00651 Lsi-Chr6:9732088 9.78E-61 dispersed
Lsi03g00492 Lsi-Chr3:5625963 Lsi08g01473 Lsi-Chr8:22849026 9.62E-150 wgd
Lsi04g01563 Lsi-Chr4:23194296 Lsi08g01473 Lsi-Chr8:22849026 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g01473 K09843 - vvi:100245540 575.859